SCOPe 2.06: Domain d1twia2: 1twi A:50-313

Lineage for d1twia2 (1twi A:50-313)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

6. Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
   most similar to eukaryotic ODC

7. Species Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
   Uniprot Q58497

8. Domain d1twia2: 1twi A:50-313 [107400]
   Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
   Structural genomics target
   complexed with lys, mg, plp

Details for d1twia2

PDB Entry: 1twi, 2 Å

PDB Description: crystal structure of diaminopimelate decarboxylase from m. jannaschii in co-complex with l-lysine

PDB Compounds: (A:) diaminopimelate decarboxylase

SCOPe Domain Sequences for d1twia2:

Sequence; same for both SEQRES and ATOM records:

>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Methanococcus jannaschii [TaxId: 2190]}
seeqikinynryieafkrweeetgkefivayaykananlaitrllaklgcgadvvsggel
yiaklsnvpskkivfngncktkeeiimgieanirafnvdsiselilinetakelgetanv
afrinpnvnpkthpkistglkknkfgldvesgiamkaikmalemeyvnvvgvhchigsql
tdispfieetrkvmdfvvelkeegieiedvnlggglgipyykdkqiptqkdladaiintm
lkykdkvempnlilepgrslvata

Timeline for d1twia2:

• d1twia2 first appeared in SCOP 1.69
  
• d1twia2 appears in SCOPe 2.05
  
• d1twia2 appears in SCOPe 2.07
  
• d1twia2 appears in the current release, SCOPe 2.08