SCOPe 2.08: Domain d1s8ja_: 1s8j A:

Lineage for d1s8ja_ (1s8j A:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
   Pfam PF13853. Phylogeny described in PubMed 12761335

5. Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)

6. Protein Bacteriorhodopsin [56871] (3 species)
   a light-driven proton pump

7. Species Halobacterium salinarum [TaxId:2242] [56873] (118 PDB entries)
   Uniprot P02945 17-245

8. Domain d1s8ja_: 1s8j A: [105372]
   complexed with li1, no3, ret; mutant

Details for d1s8ja_

PDB Entry: 1s8j, 2.3 Å

PDB Description: nitrate-bound d85s mutant of bacteriorhodopsin

PDB Compounds: (A:) Bacteriorhodopsin precursor

SCOPe Domain Sequences for d1s8ja_:

Sequence, based on SEQRES records:

>d1s8ja_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}
itgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllg
ygltmvpfggeqnpiywaryaswlfttplllldlallvdadqgtilalvgadgimigtgl
vgaltkvysyrfvwwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvvlws
aypvvwligsegagivplnietllfmvldvsakvgfglillrsraifge

Sequence, based on observed residues (ATOM records):

>d1s8ja_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}
itgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllg
yiywaryaswlfttplllldlallvdadqgtilalvgadgimigtglvgaltkvysyrfv
wwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvvlwsaypvvwligsega
givplnietllfmvldvsakvgfglillrsraifge

Timeline for d1s8ja_:

• d1s8ja_ first appeared in SCOP 1.69
  
• d1s8ja_ appears in SCOPe 2.07