SCOPe 2.08: Domain d1r8gb_: 1r8g B:

Lineage for d1r8gb_ (1r8g B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.128: Glutamine synthetase/guanido kinase [55930] (1 superfamily)
   duplication: common core consists of two beta-alpha-beta2-alpha repeats

4. Superfamily d.128.1: Glutamine synthetase/guanido kinase [55931] (6 families)

5. Family d.128.1.3: Glutamate-cysteine ligase family 2 (GCS2) [111160] (1 protein)
   Pfam PF04107; structural and functional relationships to Glutamine synthetase

6. Protein Carboxylate-amine ligase YbdK [111161] (2 species)

7. Species Escherichia coli [TaxId:562] [111162] (1 PDB entry)
   Uniprot P77213

8. Domain d1r8gb_: 1r8g B: [104846]
   Structural genomics target

Details for d1r8gb_

PDB Entry: 1r8g, 2.15 Å

PDB Description: structure and function of ybdk

PDB Compounds: (B:) Hypothetical protein ybdK

SCOPe Domain Sequences for d1r8gb_:

Sequence, based on SEQRES records:

>d1r8gb_ d.128.1.3 (B:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
plpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmlel
atdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqrqevcdneryqrtle
nfgyliqqatvfgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfass
rpnifsafpdngpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvm
dtpltlshavnmagliqatahwllterpfkhqekdyllykfnrfqacryglegvitdpht
gdrrpltedtlrllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggsligl
vkkhceiwa

Sequence, based on observed residues (ATOM records):

>d1r8gb_ d.128.1.3 (B:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
plpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhitesmlela
tdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqqrtlenfgyliqqatv
fgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfassrpnifsafpdn
gpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvmdtpltlshavn
magliqatahwllterpfkhqekdyllykfnrfqacryglegvitdphtgdrrpltedtl
rllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggsliglvkkhceiwa

Timeline for d1r8gb_:

• d1r8gb_ first appeared in SCOP 1.69
  
• d1r8gb_ appears in SCOPe 2.07