SCOPe 2.03: Domain d1r8ga_: 1r8g A:

Lineage for d1r8ga_ (1r8g A:)

1. Root: SCOPe 2.03

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.128: Glutamine synthetase/guanido kinase [55930] (1 superfamily)
   duplication: common core consists of two beta-alpha-beta2-alpha repeats

4. Superfamily d.128.1: Glutamine synthetase/guanido kinase [55931] (6 families)

5. Family d.128.1.3: Glutamate-cysteine ligase family 2 (GCS2) [111160] (1 protein)
   Pfam PF04107; structural and functional relationships to Glutamine synthetase

6. Protein Carboxylate-amine ligase YbdK [111161] (2 species)

7. Species Escherichia coli [TaxId:562] [111162] (1 PDB entry)
   Uniprot P77213

8. Domain d1r8ga_: 1r8g A: [104845]
   Structural genomics target

Details for d1r8ga_

PDB Entry: 1r8g, 2.15 Å

PDB Description: structure and function of ybdk

PDB Compounds: (A:) Hypothetical protein ybdK

SCOPe Domain Sequences for d1r8ga_:

Sequence, based on SEQRES records:

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
lpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmlela
tdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqrqevcdneryqrtlen
fgyliqqatvfgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfassr
pnifsafpdngpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvmd
tpltlshavnmagliqatahwllterpfkhqekdyllykfnrfqacryglegvitdphtg
drrpltedtlrllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggsliglv
kkhceiwa

Sequence, based on observed residues (ATOM records):

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
lpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmlela
tdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwnfgyliqqatvfgqhvh
vgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfassrpnifsafpdngpmpwv
snwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvmdtpltlshavnmagliq
atahwllterpfkhqekdyllykfnrfqacryglegvitdphtgdrrpltedtlrlleki
apsahkigassaiealhrqvvsglneaqlmrdfvadggsliglvkkhceiwa

Timeline for d1r8ga_:

• d1r8ga_ first appeared in SCOP 1.69
  
• d1r8ga_ appears in SCOPe 2.02
  
• d1r8ga_ appears in SCOPe 2.04
  
• d1r8ga_ appears in the current release, SCOPe 2.08