Lineage for d1qyab1 (1qya B:2-129)

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. Family d.21.1.2: PhzC/PhzF-like [89863] (4 proteins)
    Pfam PF02567
  6. Protein Hypothetical protein YddE [89864] (1 species)
  7. Species Escherichia coli [TaxId:562] [89865] (4 PDB entries)
    Uniprot P37757
    structural genomics; NESG target ET25
  8. Domain d1qyab1: 1qya B:2-129 [104655]
    Other proteins in same PDB: d1qyaa3, d1qyab3
    Structural genomics target

Details for d1qyab1

PDB Entry: 1qya (more details), 2 Å

PDB Description: crystal structure of e. coli protein ydde
PDB Compounds: (B:) Hypothetical protein yddE

SCOPe Domain Sequences for d1qyab1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1qyab1 d.21.1.2 (B:2-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}
kpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvrir
yftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleqg
tpgfeppl

SCOPe Domain Coordinates for d1qyab1 are not available.

Timeline for d1qyab1:

Domains from same chain:
(mouse over for more information)
d1qyab2, d1qyab3
Domains from other chains:
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d1qyaa1, d1qyaa2, d1qyaa3