SCOPe 2.08: Domain d1qvod2: 1qvo D:1-181

Lineage for d1qvod2 (1qvo D:1-181)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
   dimeric

4. Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families)

5. Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)

6. Protein Class I MHC, alpha-1 and alpha-2 domains [54468] (29 species)

7. Species Human (Homo sapiens), HLA-A11 [TaxId:9606] [110840] (4 PDB entries)
   Uniprot P13746 25-299 # 1A11_HUMAN HLA class I histocompatibility antigen, A-11 alpha chain precursor

8. Domain d1qvod2: 1qvo D:1-181 [104600]
   Other proteins in same PDB: d1qvoa1, d1qvob1, d1qvob2, d1qvod1, d1qvoe1, d1qvoe2

Details for d1qvod2

PDB Entry: 1qvo, 2.22 Å

PDB Description: structures of hla-a*1101 in complex with immunodominant nonamer and decamer hiv-1 epitopes clearly reveal the presence of a middle anchor residue

PDB Compounds: (D:) HLA class I histocompatibility antigen, A-11 alpha chain

SCOPe Domain Sequences for d1qvod2:

Sequence; same for both SEQRES and ATOM records:

>d1qvod2 d.19.1.1 (D:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-A11 [TaxId: 9606]}
gshsmryfytsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dqetrnvkaqsqtdrvdlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweaahaaeqqraylegrcvewlrrylengketlq
r

Timeline for d1qvod2:

• d1qvod2 first appeared in SCOP 1.69
  
• d1qvod2 appears in SCOPe 2.07