SCOPe 2.07: Domain d1q39a2: 1q39 A:4-124

Lineage for d1q39a2 (1q39 A:4-124)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.113: N-terminal domain of MutM-like DNA repair proteins [81625] (1 superfamily)
   pseudobarrel; capped on both ends by alpha-helices

4. Superfamily b.113.1: N-terminal domain of MutM-like DNA repair proteins [81624] (2 families)
   automatically mapped to Pfam PF01149

5. Family b.113.1.1: N-terminal domain of MutM-like DNA repair proteins [81623] (4 proteins)

6. Protein Endonuclease VIII [82233] (1 species)

7. Species Escherichia coli [TaxId:562] [82234] (8 PDB entries)
   Uniprot P50465

8. Domain d1q39a2: 1q39 A:4-124 [104516]
   Other proteins in same PDB: d1q39a1, d1q39a3
   complexed with ca, zn

Details for d1q39a2

PDB Entry: 1q39, 2.8 Å

PDB Description: Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The WT enzyme at 2.8 resolution.

PDB Compounds: (A:) Endonuclease VIII

SCOPe Domain Sequences for d1q39a2:

Sequence, based on SEQRES records:

>d1q39a2 b.113.1.1 (A:4-124) Endonuclease VIII {Escherichia coli [TaxId: 562]}
peirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsndlt
lyshnqlygvwrvvdtgeepqttrvlrvklqtadktillysasdiemlrpeqltthpflq
r

Sequence, based on observed residues (ATOM records):

>d1q39a2 b.113.1.1 (A:4-124) Endonuclease VIII {Escherichia coli [TaxId: 562]}
peirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsndlt
lyshnqlygvwrvvdtgeettrvlrvklqtadktillysasdiemlrpeqltthpflqr

Timeline for d1q39a2:

• d1q39a2 first appeared in SCOP 1.69
  
• d1q39a2 appears in SCOPe 2.06
  
• d1q39a2 appears in the current release, SCOPe 2.08