SCOPe 2.08: Domain d1pvfb1: 1pvf B:4-182

Lineage for d1pvfb1 (1pvf B:4-182)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.113: Nudix [55810] (1 superfamily)
   beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
   contains beta-grasp motif

4. Superfamily d.113.1: Nudix [55811] (8 families)

5. Family d.113.1.2: IPP isomerase-like [64369] (4 proteins)

6. Protein Isopentenyl diphosphate isomerase [64370] (2 species)

7. Species Escherichia coli [TaxId:562] [64371] (18 PDB entries)
   Uniprot Q46822

8. Domain d1pvfb1: 1pvf B:4-182 [104324]
   Other proteins in same PDB: d1pvfb2
   complexed with dpo, mg, mn

Details for d1pvfb1

PDB Entry: 1pvf, 1.78 Å

PDB Description: E.coli IPP isomerase in complex with diphosphate

PDB Compounds: (B:) Isopentenyl-diphosphate delta-isomerase

SCOPe Domain Sequences for d1pvfb1:

Sequence; same for both SEQRES and ATOM records:

>d1pvfb1 d.113.1.2 (B:4-182) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}
ehvillnaqgvptgtlekyaahtadtrlhlafsswlfnakgqllvtrralskkawpgvwt
nsvcghpqlgesnedavirrcryelgveitppesiypdfryratdpsgivenevcpvfaa
rttsalqinddevmdyqwcdladvlhgidatpwafspwmvmqatnrearkrlsaftqlk

Timeline for d1pvfb1:

• d1pvfb1 first appeared in SCOP 1.69, called d1pvfb_
  
• d1pvfb1 appears in SCOPe 2.07