Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3009172Fold d.265: Pseudouridine synthase [100877] (1 superfamily)
    consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold
  4. 3009173Superfamily d.265.1: Pseudouridine synthase [55120] (5 families) (S)
    the active site is the most conserved structural region of the superfamily and is located between the subdomains
  5. 3009235Family d.265.1.4: tRNA pseudouridine synthase TruD [103021] (1 protein)
    natural circular permutation in the catalytic domain; insertion of the family-specific alpha+beta subdomain
    automatically mapped to Pfam PF01142
  6. 3009236Protein tRNA pseudouridine synthase TruD [103022] (1 species)
  7. 3009237Species Escherichia coli [TaxId:562] [103023] (3 PDB entries)
    Uniprot Q57261
    family-specific insert subdomain: res. 158-301

PDB entries in Species: Escherichia coli [TaxId: 562]:

  1. Domain(s) for 1sb7:
    1. 3009238Domain d1sb7a1: 1sb7 A:1-341 [105408]
      Other proteins in same PDB: d1sb7a2, d1sb7b2
      complexed with gol, po4
    2. 3009239Domain d1sb7b1: 1sb7 B:1-340 [105409]
      Other proteins in same PDB: d1sb7a2, d1sb7b2
      complexed with gol, po4
  2. Domain(s) for 1si7:
  3. Domain(s) for 1szw:
    1. 3009241Domain d1szwa_: 1szw A: [99047]
    2. 3009242Domain d1szwb_: 1szw B: [99048]

More info for Species Escherichia coli [TaxId:562] from d.265.1.4 tRNA pseudouridine synthase TruD

Timeline for Species Escherichia coli [TaxId:562] from d.265.1.4 tRNA pseudouridine synthase TruD: