Lineage for Protein: Nickel responsive regulator NikR, C-terminal domain

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 723373Fold d.58: Ferredoxin-like [54861] (55 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 725281Superfamily d.58.18: ACT-like [55021] (12 families) (S)
    regulatory domain linked to a wide range of metabolic enzymes
  5. 725317Family d.58.18.4: Nickel responsive regulator NikR, C-terminal domain [102999] (1 protein)
  6. 725318Protein Nickel responsive regulator NikR, C-terminal domain [103000] (2 species)

Species:

  1. 725319Archaeon Pyrococcus horikoshii [TaxId:53953] [143375] (5 PDB entries)
    1. Domains for 2bj1:
      1. 725330Domain d2bj1a2: 2bj1 A:51-132 [128597]
        Other proteins in same PDB: d2bj1a1, d2bj1b1
        complexed with cl, ni
      2. 725331Domain d2bj1b2: 2bj1 B:51-132 [128599]
        Other proteins in same PDB: d2bj1a1, d2bj1b1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, ni
    2. Domains for 2bj3:
      1. 725324Domain d2bj3a2: 2bj3 A:51-132 [128601]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
      2. 725325Domain d2bj3b2: 2bj3 B:51-132 [128603]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
      3. 725326Domain d2bj3c2: 2bj3 C:51-132 [128605]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
      4. 725327Domain d2bj3d2: 2bj3 D:51-132 [128607]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
    3. Domains for 2bj7:
      1. 725320Domain d2bj7a2: 2bj7 A:51-132 [128609]
        Other proteins in same PDB: d2bj7a1, d2bj7b1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, ni, pg4
      2. 725321Domain d2bj7b2: 2bj7 B:51-132 [128611]
        Other proteins in same PDB: d2bj7a1, d2bj7b1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, ni, pg4
    4. Domains for 2bj8:
      1. 725322Domain d2bj8a2: 2bj8 A:51-132 [128613]
        Other proteins in same PDB: d2bj8a1, d2bj8b1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, epe, ni, pg4
      2. 725323Domain d2bj8b2: 2bj8 B:51-132 [128615]
        Other proteins in same PDB: d2bj8a1, d2bj8b1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, epe, ni, pg4
    5. Domains for 2bj9:
      1. 725328Domain d2bj9a2: 2bj9 A:51-132 [128617]
        Other proteins in same PDB: d2bj9a1, d2bj9b1
        automatically matched to 2BJ1 A:51-132
        complexed with ni, pg4, po4
      2. 725329Domain d2bj9b2: 2bj9 B:51-132 [128619]
        Other proteins in same PDB: d2bj9a1, d2bj9b1
        automatically matched to 2BJ1 A:51-132
        complexed with ni, pg4, po4
  2. 725332Escherichia coli [TaxId:562] [103001] (4 PDB entries)
    1. Domains for 1q5v:
      1. 725339Domain d1q5va2: 1q5v A:49-132 [95938]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
      2. 725340Domain d1q5vb2: 1q5v B:49-133 [95940]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
      3. 725341Domain d1q5vc2: 1q5v C:49-132 [95942]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
      4. 725342Domain d1q5vd2: 1q5v D:49-132 [95944]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
        apo form
    2. Domains for 1q5y:
      1. 725333Domain d1q5ya_: 1q5y A: [95950]
      2. 725334Domain d1q5yb_: 1q5y B: [95951]
      3. 725335Domain d1q5yc_: 1q5y C: [95952]
      4. 725336Domain d1q5yd_: 1q5y D: [95953]
        nickel-bound; C-terminal domain only
        complexed with egl, ni
    3. Domains for 2hza:
      1. 725337Domain d2hzaa2: 2hza A:49-131 [136908]
        Other proteins in same PDB: d2hzaa1, d2hzab1
        automatically matched to d1q5vb2
        complexed with 3cm, ni
      2. 725338Domain d2hzab2: 2hza B:49-131 [136910]
        Other proteins in same PDB: d2hzaa1, d2hzab1
        automatically matched to d1q5vb2
        complexed with 3cm, ni
    4. Domains for 2hzv:
      1. 725343Domain d2hzva2: 2hzv A:49-131 [136917]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      2. 725344Domain d2hzvb2: 2hzv B:49-131 [136919]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      3. 725345Domain d2hzvc2: 2hzv C:49-131 [136921]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      4. 725346Domain d2hzvd2: 2hzv D:49-131 [136923]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      5. 725347Domain d2hzve2: 2hzv E:49-131 [136925]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      6. 725348Domain d2hzvf2: 2hzv F:49-131 [136927]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      7. 725349Domain d2hzvg2: 2hzv G:49-131 [136929]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni
      8. 725350Domain d2hzvh2: 2hzv H:49-131 [136931]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automatically matched to d1q5vb2
        complexed with k, ni

More info for Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain

Timeline for Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain:

  • Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain first appeared in SCOP 1.67
  • Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain appears in SCOP 1.71
  • Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain appears in SCOP 1.75
  • Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain appears in the current release, SCOPe 2.08