Lineage for Protein: Nickel responsive regulator NikR, C-terminal domain

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2176307Superfamily d.58.18: ACT-like [55021] (15 families) (S)
    regulatory domain linked to a wide range of metabolic enzymes
  5. 2176351Family d.58.18.4: Nickel responsive regulator NikR, C-terminal domain [102999] (2 protein domains)
    automatically mapped to Pfam PF08753
  6. 2176352Protein Nickel responsive regulator NikR, C-terminal domain [103000] (2 species)

Species:

  1. 2176353Escherichia coli [TaxId:562] [103001] (8 PDB entries)
    1. Domains for 1q5v:
      1. 2176365Domain d1q5va2: 1q5v A:49-132 [95938]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
        apo form
      2. 2176366Domain d1q5vb2: 1q5v B:49-133 [95940]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
        apo form
      3. 2176367Domain d1q5vc2: 1q5v C:49-132 [95942]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
        apo form
      4. 2176368Domain d1q5vd2: 1q5v D:49-132 [95944]
        Other proteins in same PDB: d1q5va1, d1q5vb1, d1q5vc1, d1q5vd1
        apo form
    2. Domains for 1q5y:
      1. 2176354Domain d1q5ya_: 1q5y A: [95950]
        nickel-bound; C-terminal domain only
        complexed with edo, ni
      2. 2176355Domain d1q5yb_: 1q5y B: [95951]
        nickel-bound; C-terminal domain only
        complexed with edo, ni
      3. 2176356Domain d1q5yc_: 1q5y C: [95952]
        nickel-bound; C-terminal domain only
        complexed with edo, ni
      4. 2176357Domain d1q5yd_: 1q5y D: [95953]
        nickel-bound; C-terminal domain only
        complexed with edo, ni
    3. Domains for 2hza:
      1. 2176363Domain d2hzaa2: 2hza A:49-131 [136908]
        Other proteins in same PDB: d2hzaa1, d2hzab1
        automated match to d1q5va2
        complexed with 3cm, ni
      2. 2176364Domain d2hzab2: 2hza B:49-131 [136910]
        Other proteins in same PDB: d2hzaa1, d2hzab1
        automated match to d1q5va2
        complexed with 3cm, ni
    4. Domains for 2hzv:
      1. 2176375Domain d2hzva2: 2hzv A:49-131 [136917]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      2. 2176376Domain d2hzvb2: 2hzv B:49-131 [136919]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      3. 2176377Domain d2hzvc2: 2hzv C:49-131 [136921]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      4. 2176378Domain d2hzvd2: 2hzv D:49-131 [136923]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      5. 2176379Domain d2hzve2: 2hzv E:49-131 [136925]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      6. 2176380Domain d2hzvf2: 2hzv F:49-131 [136927]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      7. 2176381Domain d2hzvg2: 2hzv G:49-131 [136929]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
      8. 2176382Domain d2hzvh2: 2hzv H:49-131 [136931]
        Other proteins in same PDB: d2hzva1, d2hzvb1, d2hzvc1, d2hzvd1, d2hzve1, d2hzvf1, d2hzvg1, d2hzvh1
        automated match to d1q5va2
        protein/DNA complex; complexed with k, ni
    5. Domain for 3bkf:
    6. Domains for 3bkt:
      1. 2176358Domain d3bkta_: 3bkt A: [155364]
        automated match to d1q5ya_
        complexed with cu
      2. 2176359Domain d3bktb_: 3bkt B: [155365]
        automated match to d1q5ya_
        complexed with cu
      3. 2176360Domain d3bktc_: 3bkt C: [155366]
        automated match to d1q5ya_
        complexed with cu
      4. 2176361Domain d3bktd_: 3bkt D: [155367]
        automated match to d1q5ya_
        complexed with cu
    7. Domains for 3bku:
      1. 2176369Domain d3bkua_: 3bku A: [155368]
        automated match to d1q5ya_
      2. 2176370Domain d3bkub_: 3bku B: [155369]
        automated match to d1q5ya_
      3. 2176371Domain d3bkuc_: 3bku C: [155370]
        automated match to d1q5ya_
      4. 2176372Domain d3bkud_: 3bku D: [155371]
        automated match to d1q5ya_
    8. Domains for 3od2:
      1. 2176373Domain d3od2a2: 3od2 A:49-132 [214312]
        Other proteins in same PDB: d3od2a1, d3od2b1
        automated match to d1q5va2
        complexed with 3cm, ni
      2. 2176374Domain d3od2b2: 3od2 B:49-132 [214314]
        Other proteins in same PDB: d3od2a1, d3od2b1
        automated match to d1q5va2
        complexed with 3cm, ni
  2. 2176383Pyrococcus horikoshii [TaxId:53953] [143375] (4 PDB entries)
    Uniprot O58316 51-132
    1. Domain for 2bj1:
    2. Domains for 2bj3:
      1. 2176388Domain d2bj3a2: 2bj3 A:51-136 [128601]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automated match to d2bj1a2
        complexed with cl, mg
      2. 2176389Domain d2bj3b2: 2bj3 B:51-138 [128603]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automated match to d2bj1a2
        complexed with cl, mg
      3. 2176390Domain d2bj3c2: 2bj3 C:51-138 [128605]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automated match to d2bj1a2
        complexed with cl, mg
      4. 2176391Domain d2bj3d2: 2bj3 D:51-134 [128607]
        Other proteins in same PDB: d2bj3a1, d2bj3b1, d2bj3c1, d2bj3d1
        automated match to d2bj1a2
        complexed with cl, mg
    3. Domains for 2bj7:
      1. 2176384Domain d2bj7a2: 2bj7 A:51-137 [128609]
        Other proteins in same PDB: d2bj7a1, d2bj7b1
        automated match to d2bj1a2
        complexed with cl, edo, ni, pg4
      2. 2176385Domain d2bj7b2: 2bj7 B:51-138 [128611]
        Other proteins in same PDB: d2bj7a1, d2bj7b1
        automated match to d2bj1a2
        complexed with cl, edo, ni, pg4
    4. Domains for 2bj8:
      1. 2176386Domain d2bj8a2: 2bj8 A:51-137 [128613]
        Other proteins in same PDB: d2bj8a1, d2bj8b1
        automated match to d2bj1a2
        complexed with cl, edo, epe, ni, pg4
      2. 2176387Domain d2bj8b2: 2bj8 B:51-138 [128615]
        Other proteins in same PDB: d2bj8a1, d2bj8b1
        automated match to d2bj1a2
        complexed with cl, edo, epe, ni, pg4

More info for Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain

Timeline for Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain:

  • Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain first appeared in SCOP 1.67
  • Protein Nickel responsive regulator NikR, C-terminal domain from d.58.18.4: Nickel responsive regulator NikR, C-terminal domain appears in SCOPe 2.05