SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: Glutamate decarboxylase beta, GadB

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2132106Family c.67.1.6: Pyridoxal-dependent decarboxylase [69565] (4 protein domains)
    automatically mapped to Pfam PF00282
  6. 2132117Protein Glutamate decarboxylase beta, GadB [102596] (2 species)

Species:

  1. 2132118Escherichia coli K-12 [TaxId:83333] [188775] (3 PDB entries)
    1. Domains for 3fz6:
      1. 2132125Domain d3fz6a_: 3fz6 A: [176185]
        automated match to d1pmob_
        complexed with pmp, xe
      2. 2132126Domain d3fz6b_: 3fz6 B: [176186]
        automated match to d1pmob_
        complexed with pmp, xe
      3. 2132127Domain d3fz6c_: 3fz6 C: [176187]
        automated match to d1pmob_
        complexed with pmp, xe
      4. 2132128Domain d3fz6d_: 3fz6 D: [176188]
        automated match to d1pmob_
        complexed with pmp, xe
      5. 2132129Domain d3fz6e_: 3fz6 E: [176189]
        automated match to d1pmob_
        complexed with pmp, xe
      6. 2132130Domain d3fz6f_: 3fz6 F: [176190]
        automated match to d1pmob_
        complexed with pmp, xe
    2. Domains for 3fz7:
      1. 2132119Domain d3fz7a_: 3fz7 A: [176191]
        automated match to d1pmob_
        complexed with po4
      2. 2132120Domain d3fz7b_: 3fz7 B: [176192]
        automated match to d1pmob_
        complexed with po4
      3. 2132121Domain d3fz7c_: 3fz7 C: [176193]
        automated match to d1pmob_
        complexed with po4
      4. 2132122Domain d3fz7d_: 3fz7 D: [176194]
        automated match to d1pmob_
        complexed with po4
      5. 2132123Domain d3fz7e_: 3fz7 E: [176195]
        automated match to d1pmob_
        complexed with po4
      6. 2132124Domain d3fz7f_: 3fz7 F: [176196]
        automated match to d1pmob_
        complexed with po4
    3. Domains for 3fz8:
      1. 2132131Domain d3fz8a_: 3fz8 A: [246205]
        automated match to d3fz7f_
        complexed with plr
      2. 2132132Domain d3fz8b_: 3fz8 B: [246206]
        automated match to d3fz7f_
        complexed with plr
      3. 2132133Domain d3fz8c_: 3fz8 C: [246207]
        automated match to d3fz7f_
        complexed with plr
      4. 2132134Domain d3fz8d_: 3fz8 D: [246208]
        automated match to d3fz7f_
        complexed with plr
      5. 2132135Domain d3fz8e_: 3fz8 E: [246209]
        automated match to d3fz7f_
        complexed with plr
      6. 2132136Domain d3fz8f_: 3fz8 F: [246210]
        automated match to d3fz7f_
        complexed with plr
  2. 2132137Escherichia coli [TaxId:562] [102597] (5 PDB entries)
    1. Domains for 1pmm:
      1. 2132138Domain d1pmma_: 1pmm A: [94901]
        complexed with acy, plp
      2. 2132139Domain d1pmmb_: 1pmm B: [94902]
        complexed with acy, plp
      3. 2132140Domain d1pmmc_: 1pmm C: [94903]
        complexed with acy, plp
      4. 2132141Domain d1pmmd_: 1pmm D: [94904]
        complexed with acy, plp
      5. 2132142Domain d1pmme_: 1pmm E: [94905]
        complexed with acy, plp
      6. 2132143Domain d1pmmf_: 1pmm F: [94906]
        complexed with acy, plp
    2. Domains for 1pmo:
      1. 2132156Domain d1pmoa_: 1pmo A: [94908]
        complexed with plr, trs
      2. 2132157Domain d1pmob_: 1pmo B: [94909]
        complexed with plr, trs
      3. 2132158Domain d1pmoc_: 1pmo C: [94910]
        complexed with plr, trs
      4. 2132159Domain d1pmod_: 1pmo D: [94911]
        complexed with plr, trs
      5. 2132160Domain d1pmoe_: 1pmo E: [94912]
        complexed with plr, trs
      6. 2132161Domain d1pmof_: 1pmo F: [94913]
        complexed with plr, trs
    3. Domains for 2dgk:
      1. 2132144Domain d2dgka_: 2dgk A: [163631]
        automated match to d1pmoa_
        complexed with edo, plp, so4; mutant
      2. 2132145Domain d2dgkb_: 2dgk B: [163632]
        automated match to d1pmoa_
        complexed with edo, plp, so4; mutant
      3. 2132146Domain d2dgkc_: 2dgk C: [163633]
        automated match to d1pmoa_
        complexed with edo, plp, so4; mutant
      4. 2132147Domain d2dgkd_: 2dgk D: [163634]
        automated match to d1pmoa_
        complexed with edo, plp, so4; mutant
      5. 2132148Domain d2dgke_: 2dgk E: [163635]
        automated match to d1pmoa_
        complexed with edo, plp, so4; mutant
      6. 2132149Domain d2dgkf_: 2dgk F: [163636]
        automated match to d1pmoa_
        complexed with edo, plp, so4; mutant
    4. Domains for 2dgl:
      1. 2132162Domain d2dgla_: 2dgl A: [131502]
        automated match to d3fz7f_
        complexed with acy, br, plp
      2. 2132163Domain d2dglb_: 2dgl B: [131503]
        automated match to d3fz7f_
        complexed with acy, br, plp
      3. 2132164Domain d2dglc_: 2dgl C: [131504]
        automated match to d3fz7f_
        complexed with acy, br, plp
      4. 2132165Domain d2dgld_: 2dgl D: [131505]
        automated match to d3fz7f_
        complexed with acy, br, plp
      5. 2132166Domain d2dgle_: 2dgl E: [131506]
        automated match to d3fz7f_
        complexed with acy, br, plp
      6. 2132167Domain d2dglf_: 2dgl F: [131507]
        automated match to d3fz7f_
        complexed with acy, br, plp
    5. Domains for 2dgm:
      1. 2132150Domain d2dgma_: 2dgm A: [131508]
        automated match to d1pmob_
        complexed with acy, fmt, iod, peg, plp
      2. 2132151Domain d2dgmb_: 2dgm B: [131509]
        automated match to d1pmob_
        complexed with acy, fmt, iod, peg, plp
      3. 2132152Domain d2dgmc_: 2dgm C: [131510]
        automated match to d1pmob_
        complexed with acy, fmt, iod, peg, plp
      4. 2132153Domain d2dgmd_: 2dgm D: [131511]
        automated match to d1pmob_
        complexed with acy, fmt, iod, peg, plp
      5. 2132154Domain d2dgme_: 2dgm E: [131512]
        automated match to d1pmob_
        complexed with acy, fmt, iod, peg, plp
      6. 2132155Domain d2dgmf_: 2dgm F: [131513]
        automated match to d1pmob_
        complexed with acy, fmt, iod, peg, plp

More info for Protein Glutamate decarboxylase beta, GadB from c.67.1.6: Pyridoxal-dependent decarboxylase

Timeline for Protein Glutamate decarboxylase beta, GadB from c.67.1.6: Pyridoxal-dependent decarboxylase: