SCOP 1.67: Species: Aquifex aeolicus

Root: SCOP 1.67
Class c: Alpha and beta proteins (a/b) [51349] (130 folds)
Fold c.116: alpha/beta knot [75216] (1 superfamily)
core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
Superfamily c.116.1: alpha/beta knot [75217] (5 families)
known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
all known members have dimeric structures
Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (1 protein)
fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
Protein tRNA(m1G37)-methyltransferase TrmD [89630] (2 species)
Species Aquifex aeolicus [TaxId:63363] [102278] (1 PDB entry)

Domain(s) for 1oy5:
1. Domain d1oy5a_: 1oy5 A: [93718]
2. Domain d1oy5b_: 1oy5 B: [93719]
3. Domain d1oy5c_: 1oy5 C: [93720]
  a TrmD topoisomer that lacks the knot; misfolded inactive structure?

Timeline for Species Aquifex aeolicus [TaxId:63363] from c.116.1.4 tRNA(m1G37)-methyltransferase TrmD:

Species Aquifex aeolicus [TaxId:63363] from c.116.1.4 tRNA(m1G37)-methyltransferase TrmD is new in SCOP 1.67
Species Aquifex aeolicus [TaxId:63363] from c.116.1.4 tRNA(m1G37)-methyltransferase TrmD appears in SCOP 1.69
Species Aquifex aeolicus [TaxId:63363] from c.116.1.4 tRNA(m1G37)-methyltransferase TrmD appears in the current release, SCOPe 2.08