Lineage for Species: Aquifex aeolicus [TaxId: 63363]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150174Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2150175Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2150238Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 protein domains)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2150239Protein tRNA(m1G37)-methyltransferase TrmD [89630] (3 species)
  7. 2150240Species Aquifex aeolicus [TaxId:63363] [102278] (1 PDB entry)

PDB entry in Species: Aquifex aeolicus [TaxId: 63363]:

  • Domain(s) for 1oy5:
    1. 2150241Domain d1oy5a_: 1oy5 A: [93718]
      a TrmD topoisomer that lacks the knot; misfolded inactive structure?
    2. 2150242Domain d1oy5b_: 1oy5 B: [93719]
      a TrmD topoisomer that lacks the knot; misfolded inactive structure?
    3. 2150243Domain d1oy5c_: 1oy5 C: [93720]
      a TrmD topoisomer that lacks the knot; misfolded inactive structure?

More info for Species Aquifex aeolicus [TaxId:63363] from c.116.1.4 tRNA(m1G37)-methyltransferase TrmD

Timeline for Species Aquifex aeolicus [TaxId:63363] from c.116.1.4 tRNA(m1G37)-methyltransferase TrmD: