SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Archaeoglobus fulgidus [TaxId: 2234]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150569Fold c.120: PIN domain-like [88722] (1 superfamily)
    3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
  4. 2150570Superfamily c.120.1: PIN domain-like [88723] (3 families) (S)
  5. 2150626Family c.120.1.2: 5' to 3' exonuclease catalytic domain [53045] (4 protein domains)
    contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold
  6. 2150633Protein Flap endonuclease-1 (Fen-1 nuclease) [53052] (5 species)
  7. 2150634Species Archaeoglobus fulgidus [TaxId:2234] [102272] (2 PDB entries)

PDB entries in Species: Archaeoglobus fulgidus [TaxId: 2234]:

  1. Domain(s) for 1rxv:
    1. 2150636Domain d1rxva2: 1rxv A:4-219 [98056]
      Other proteins in same PDB: d1rxva1, d1rxvb1
      protein/DNA complex
    2. 2150637Domain d1rxvb2: 1rxv B:4-219 [98058]
      Other proteins in same PDB: d1rxva1, d1rxvb1
      protein/DNA complex
  2. Domain(s) for 1rxw:

More info for Species Archaeoglobus fulgidus [TaxId:2234] from c.120.1.2 Flap endonuclease-1 (Fen-1 nuclease)

Timeline for Species Archaeoglobus fulgidus [TaxId:2234] from c.120.1.2 Flap endonuclease-1 (Fen-1 nuclease):