SCOP 1.75: Species: Rat (Rattus norvegicus) [TaxId: 10116]

Lineage for Species: Rat (Rattus norvegicus) [TaxId: 10116]

Root: SCOP 1.75
Class b: All beta proteins [48724] (174 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (4 families)
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)

Protein Immunoglobulin light chain lambda variable domain, VL-lambda [88534] (9 species)
VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family

Species Rat (Rattus norvegicus) [TaxId:10116] [101504] (8 PDB entries)

PDB entries in Species: Rat (Rattus norvegicus) [TaxId: 10116]:

Domain(s) for 1oaq:
- Domain d1oaql_: 1oaq L: [92708]
  Other proteins in same PDB: d1oaqh_
  part of IgE Fv spe-7
Domain(s) for 1oar:
1. Domain d1oarl_: 1oar L: [92713]
  Other proteins in same PDB: d1oarh_, d1oari_, d1oarj_, d1oark_
  part of IgE Fv spe-7
2. Domain d1oarm_: 1oar M: [92714]
  Other proteins in same PDB: d1oarh_, d1oari_, d1oarj_, d1oark_
  part of IgE Fv spe-7
3. Domain d1oarn_: 1oar N: [92715]
  Other proteins in same PDB: d1oarh_, d1oari_, d1oarj_, d1oark_
  part of IgE Fv spe-7
4. Domain d1oaro_: 1oar O: [92716]
  Other proteins in same PDB: d1oarh_, d1oari_, d1oarj_, d1oark_
  part of IgE Fv spe-7
  complexed with azn, cac, cl, dms, edo, na
Domain(s) for 1oau:
1. Domain d1oaul_: 1oau L: [92721]
  Other proteins in same PDB: d1oauh_, d1oaui_, d1oauj_, d1oauk_
  part of IgE Fv spe-7
2. Domain d1oaum_: 1oau M: [92722]
  Other proteins in same PDB: d1oauh_, d1oaui_, d1oauj_, d1oauk_
  part of IgE Fv spe-7
3. Domain d1oaun_: 1oau N: [92723]
  Other proteins in same PDB: d1oauh_, d1oaui_, d1oauj_, d1oauk_
  part of IgE Fv spe-7
4. Domain d1oauo_: 1oau O: [92724]
  Other proteins in same PDB: d1oauh_, d1oaui_, d1oauj_, d1oauk_
  part of IgE Fv spe-7
  complexed with dnf, imd, ser
Domain(s) for 1oax:
1. Domain d1oaxl_: 1oax L: [92729]
  Other proteins in same PDB: d1oaxh_, d1oaxj_
  part of IgE Fv spe-7
2. Domain d1oaxm_: 1oax M: [92730]
  Other proteins in same PDB: d1oaxh_, d1oaxj_
  part of IgE Fv spe-7
3. Domain d1oaxn_: 1oax N: [92731]
  Other proteins in same PDB: d1oaxh_, d1oaxj_
  part of IgE Fv spe-7
4. Domain d1oaxo_: 1oax O: [92732]
  Other proteins in same PDB: d1oaxh_, d1oaxj_
  part of IgE Fv spe-7
  complexed with anq
Domain(s) for 1oay:
1. Domain d1oayl_: 1oay L: [92737]
  Other proteins in same PDB: d1oayh_, d1oayj_
  part of IgE Fv spe-7
2. Domain d1oaym_: 1oay M: [92738]
  Other proteins in same PDB: d1oayh_, d1oayj_
  part of IgE Fv spe-7
3. Domain d1oayn_: 1oay N: [92739]
  Other proteins in same PDB: d1oayh_, d1oayj_
  part of IgE Fv spe-7
4. Domain d1oayo_: 1oay O: [92740]
  Other proteins in same PDB: d1oayh_, d1oayj_
  part of IgE Fv spe-7
  complexed with fur
Domain(s) for 1oaz:
1. Domain d1oazl_: 1oaz L: [92745]
  Other proteins in same PDB: d1oaza_, d1oazb_, d1oazh_, d1oazj_
  part of IgE Fv spe-7
2. Domain d1oazn_: 1oaz N: [92746]
  Other proteins in same PDB: d1oaza_, d1oazb_, d1oazh_, d1oazj_
  part of IgE Fv spe-7
Domain(s) for 1ocw:
- Domain d1ocwl_: 1ocw L: [92780]
  Other proteins in same PDB: d1ocwh_
  part of IgE Fv spe-7
Domain(s) for 2bjm:
- Domain d2bjml1: 2bjm L:1-109 [128625]
  Other proteins in same PDB: d2bjmh1
  automatically matched to d1oaql_
  complexed with anf

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda:

Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda first appeared in SCOP 1.67
Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda appears in SCOP 1.73
Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda is called Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda in SCOPe 2.01
Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda appears in the current release, SCOPe 2.08, called Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda