SCOPe 2.05: Protein: tRNA nucleotidyltransferase, second domain

Lineage for Protein: tRNA nucleotidyltransferase, second domain

Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds)
Fold a.160: PAP/OAS1 substrate-binding domain [81632] (1 superfamily)
core: 5-helical bundle; up-and-down; right-handed twist
Superfamily a.160.1: PAP/OAS1 substrate-binding domain [81631] (7 families)
this domain follows the catalytic nucleotidyltransferase domain
Family a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain [101274] (1 protein)
automatically mapped to Pfam PF09249
Protein tRNA nucleotidyltransferase, second domain [101275] (1 species)

Species:

Archaeoglobus fulgidus [TaxId:2234] [101276] (26 PDB entries)
Uniprot O28126
1. Domain for 1r89:
  - Domain d1r89a1: 1r89 A:143-257 [97221]
    Other proteins in same PDB: d1r89a2, d1r89a3
    complexed with cl, ctp, mg, mn, na
2. Domain for 1r8a:
  - Domain d1r8aa1: 1r8a A:143-257 [97224]
    Other proteins in same PDB: d1r8aa2, d1r8aa3
    complexed with mn, na
3. Domain for 1r8b:
  - Domain d1r8ba1: 1r8b A:143-257 [97227]
    Other proteins in same PDB: d1r8ba2, d1r8ba3
    complexed with atp, cl, mg, mn, na
4. Domain for 1r8c:
  - Domain d1r8ca1: 1r8c A:143-257 [97230]
    Other proteins in same PDB: d1r8ca2, d1r8ca3
    complexed with mn, na, utp
5. Domains for 1sz1:
  1. Domain d1sz1a1: 1sz1 A:143-257 [106133]
    Other proteins in same PDB: d1sz1a2, d1sz1a3, d1sz1b2, d1sz1b3
    protein/RNA complex
  2. Domain d1sz1b1: 1sz1 B:143-257 [106136]
    Other proteins in same PDB: d1sz1a2, d1sz1a3, d1sz1b2, d1sz1b3
    protein/RNA complex
6. Domains for 1tfw:
  1. Domain d1tfwa1: 1tfw A:143-257 [106862]
    Other proteins in same PDB: d1tfwa2, d1tfwa3, d1tfwb2, d1tfwb3, d1tfwc2, d1tfwc3, d1tfwd2, d1tfwd3
    protein/RNA complex; complexed with atp, mg
  2. Domain d1tfwb1: 1tfw B:143-257 [106865]
    Other proteins in same PDB: d1tfwa2, d1tfwa3, d1tfwb2, d1tfwb3, d1tfwc2, d1tfwc3, d1tfwd2, d1tfwd3
    protein/RNA complex; complexed with atp, mg
  3. Domain d1tfwc1: 1tfw C:143-257 [106868]
    Other proteins in same PDB: d1tfwa2, d1tfwa3, d1tfwb2, d1tfwb3, d1tfwc2, d1tfwc3, d1tfwd2, d1tfwd3
    protein/RNA complex; complexed with atp, mg
  4. Domain d1tfwd1: 1tfw D:143-257 [106871]
    Other proteins in same PDB: d1tfwa2, d1tfwa3, d1tfwb2, d1tfwb3, d1tfwc2, d1tfwc3, d1tfwd2, d1tfwd3
    protein/RNA complex; complexed with atp, mg
7. Domains for 1tfy:
  1. Domain d1tfya1: 1tfy A:143-257 [106874]
    Other proteins in same PDB: d1tfya2, d1tfya3, d1tfyb2, d1tfyb3, d1tfyc2, d1tfyc3, d1tfyd2, d1tfyd3
    protein/RNA complex; complexed with ctp, mg
  2. Domain d1tfyb1: 1tfy B:143-257 [106877]
    Other proteins in same PDB: d1tfya2, d1tfya3, d1tfyb2, d1tfyb3, d1tfyc2, d1tfyc3, d1tfyd2, d1tfyd3
    protein/RNA complex; complexed with ctp, mg
  3. Domain d1tfyc1: 1tfy C:143-257 [106880]
    Other proteins in same PDB: d1tfya2, d1tfya3, d1tfyb2, d1tfyb3, d1tfyc2, d1tfyc3, d1tfyd2, d1tfyd3
    protein/RNA complex; complexed with ctp, mg
  4. Domain d1tfyd1: 1tfy D:143-257 [106883]
    Other proteins in same PDB: d1tfya2, d1tfya3, d1tfyb2, d1tfyb3, d1tfyc2, d1tfyc3, d1tfyd2, d1tfyd3
    protein/RNA complex; complexed with ctp, mg
8. Domain for 1uet:
  - Domain d1ueta1: 1uet A:143-257 [99272]
    Other proteins in same PDB: d1ueta2, d1ueta3
    complexed with act, ca, mg
9. Domain for 1ueu:
  - Domain d1ueua1: 1ueu A:143-257 [99275]
    Other proteins in same PDB: d1ueua2, d1ueua3
    complexed with act, ctp, mg
10. Domain for 1uev:
  - Domain d1ueva1: 1uev A:143-257 [99278]
    Other proteins in same PDB: d1ueva2, d1ueva3
    complexed with atp, ca, mg
11. Domain for 2dr5:
  - Domain d2dr5a1: 2dr5 A:143-257 [131654]
    Other proteins in same PDB: d2dr5a2, d2dr5a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
12. Domain for 2dr7:
  - Domain d2dr7a1: 2dr7 A:143-257 [131657]
    Other proteins in same PDB: d2dr7a2, d2dr7a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
13. Domain for 2dr8:
  - Domain d2dr8a1: 2dr8 A:143-257 [131660]
    Other proteins in same PDB: d2dr8a2, d2dr8a3
    automated match to d1r89a1
    protein/RNA complex; complexed with ctp, mg, so4
14. Domain for 2dr9:
  - Domain d2dr9a1: 2dr9 A:143-257 [131663]
    Other proteins in same PDB: d2dr9a2, d2dr9a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
15. Domain for 2dra:
  - Domain d2draa1: 2dra A:143-257 [131666]
    Other proteins in same PDB: d2draa2, d2draa3
    automated match to d1r89a1
    protein/RNA complex; complexed with atp, mg, so4
16. Domain for 2drb:
  - Domain d2drba1: 2drb A:143-257 [131669]
    Other proteins in same PDB: d2drba2, d2drba3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
17. Domain for 2dvi:
  - Domain d2dvia1: 2dvi A:143-257 [131790]
    Other proteins in same PDB: d2dvia2, d2dvia3
    automated match to d1r89a1
    protein/RNA complex; complexed with ctp, mg, so4
18. Domain for 2zh1:
  - Domain d2zh1a1: 2zh1 A:143-257 [154433]
    Other proteins in same PDB: d2zh1a2, d2zh1a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
19. Domain for 2zh2:
  - Domain d2zh2a1: 2zh2 A:143-257 [154436]
    Other proteins in same PDB: d2zh2a2, d2zh2a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
20. Domain for 2zh3:
  - Domain d2zh3a1: 2zh3 A:143-257 [154439]
    Other proteins in same PDB: d2zh3a2, d2zh3a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
21. Domain for 2zh4:
  - Domain d2zh4a1: 2zh4 A:143-257 [154442]
    Other proteins in same PDB: d2zh4a2, d2zh4a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
22. Domain for 2zh5:
  - Domain d2zh5a1: 2zh5 A:143-257 [154445]
    Other proteins in same PDB: d2zh5a2, d2zh5a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
23. Domain for 2zh6:
  - Domain d2zh6a1: 2zh6 A:143-257 [154448]
    Other proteins in same PDB: d2zh6a2, d2zh6a3
    automated match to d1r89a1
    protein/RNA complex; complexed with atp, mg, so4
24. Domain for 2zh8:
  - Domain d2zh8a1: 2zh8 A:143-257 [154454]
    Other proteins in same PDB: d2zh8a2, d2zh8a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
25. Domain for 2zh9:
  - Domain d2zh9a1: 2zh9 A:143-257 [154457]
    Other proteins in same PDB: d2zh9a2, d2zh9a3
    automated match to d1r89a1
    protein/RNA complex; complexed with so4
26. Domain for 2zha:
  - Domain d2zhaa1: 2zha A:143-257 [154460]
    Other proteins in same PDB: d2zhaa2, d2zhaa3
    automated match to d1r89a1
    protein/RNA complex; complexed with ctp, mg, so4

More info for Protein tRNA nucleotidyltransferase, second domain from a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain

Timeline for Protein tRNA nucleotidyltransferase, second domain from a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain:

Protein tRNA nucleotidyltransferase, second domain from a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain first appeared in SCOP 1.67
Protein tRNA nucleotidyltransferase, second domain from a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain appears in SCOPe 2.04
Protein tRNA nucleotidyltransferase, second domain from a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain appears in SCOPe 2.06
Protein tRNA nucleotidyltransferase, second domain from a.160.1.3: Archaeal tRNA CCA-adding enzyme substrate-binding domain appears in the current release, SCOPe 2.08