SCOP 1.71: Protein: DinB homolog (DBH)

Lineage for Protein: DinB homolog (DBH)

Root: SCOP 1.71
Class e: Multi-domain proteins (alpha and beta) [56572] (48 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (4 proteins)
contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)

Protein DinB homolog (DBH) [100889] (2 species)

Species:

Archaeon Sulfolobus solfataricus [TaxId:2287] [100891] (3 PDB entries)
1. Domain for 1im4:
  - Domain d1im4a_: 1im4 A: [62581]
    "palm" and "fingers" domains only
    complexed with so4
2. Domains for 1k1q:
  1. Domain d1k1qa2: 1k1q A:1-239 [90383]
    Other proteins in same PDB: d1k1qa1, d1k1qb1
  2. Domain d1k1qb2: 1k1q B:1-239 [90385]
    Other proteins in same PDB: d1k1qa1, d1k1qb1
    mutant
3. Domain for 1k1s:
  - Domain d1k1sa2: 1k1s A:1-239 [90387]
    Other proteins in same PDB: d1k1sa1
    mutant
Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (11 PDB entries)
1. Domain for 1jx4:
  - Domain d1jx4a2: 1jx4 A:1-240 [90379]
    Other proteins in same PDB: d1jx4a1
    complexed with adi, ca, mg
2. Domain for 1jxl:
  - Domain d1jxla2: 1jxl A:1-240 [90381]
    Other proteins in same PDB: d1jxla1
    complexed with bro, ca, dg3, edo, mg
3. Domain for 1n48:
  - Domain d1n48a2: 1n48 A:1-240 [91616]
    Other proteins in same PDB: d1n48a1
    complexed with 3dr, atp, ca
4. Domains for 1n56:
  1. Domain d1n56a2: 1n56 A:1-240 [91681]
    Other proteins in same PDB: d1n56a1, d1n56b1
  2. Domain d1n56b2: 1n56 B:1-240 [91683]
    Other proteins in same PDB: d1n56a1, d1n56b1
    complexed with 3dr, atp, ca, mg
5. Domain for 1ryr:
  - Domain d1ryra2: 1ryr A:1-240 [98110]
    Other proteins in same PDB: d1ryra1
    complexed with atp, ca
6. Domains for 1rys:
  1. Domain d1rysa2: 1rys A:1-240 [98112]
    Other proteins in same PDB: d1rysa1, d1rysb1
  2. Domain d1rysb2: 1rys B:1-240 [98114]
    Other proteins in same PDB: d1rysa1, d1rysb1
    complexed with atp, ca, edo, na
7. Domains for 1s0m:
  1. Domain d1s0ma2: 1s0m A:1-240 [98291]
    Other proteins in same PDB: d1s0ma1, d1s0mb1
  2. Domain d1s0mb2: 1s0m B:1-240 [98293]
    Other proteins in same PDB: d1s0ma1, d1s0mb1
    complexed with atp, bpa, ca, mg
8. Domain for 1s0n:
  - Domain d1s0na2: 1s0n A:1-240 [98295]
    Other proteins in same PDB: d1s0na1
    complexed with ca, dcp
9. Domains for 1s0o:
  1. Domain d1s0oa2: 1s0o A:1-240 [98297]
    Other proteins in same PDB: d1s0oa1, d1s0ob1
  2. Domain d1s0ob2: 1s0o B:1-240 [98299]
    Other proteins in same PDB: d1s0oa1, d1s0ob1
    complexed with ca, mg, ttp
10. Domain for 1s10:
  - Domain d1s10a2: 1s10 A:1-240 [98328]
    Other proteins in same PDB: d1s10a1
    complexed with ca, dcp
11. Domains for 1s97:
  1. Domain d1s97a2: 1s97 A:1-240 [98743]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  2. Domain d1s97b2: 1s97 B:1-240 [98745]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  3. Domain d1s97c2: 1s97 C:1-240 [98747]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  4. Domain d1s97d2: 1s97 D:1-240 [98749]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    complexed with ca, dct

More info for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain:

Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain first appeared in SCOP 1.67
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOP 1.69
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOP 1.73
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in the current release, SCOPe 2.08