SCOPe 2.08: Domain d1vicb_: 1vic B:

Lineage for d1vicb_ (1vic B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.13: Cytidylytransferase [68901] (7 proteins)

6. Protein CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase [64143] (3 species)

7. Species Haemophilus influenzae [TaxId:727] [102607] (2 PDB entries)

8. Domain d1vicb_: 1vic B: [100757]
   Other proteins in same PDB: d1vica2
   structural genomics

Details for d1vicb_

PDB Entry: 1vic, 1.8 Å

PDB Description: crystal structure of cmp-kdo synthetase

PDB Compounds: (B:) 3-deoxy-manno-octulosonate cytidylyltransferase

SCOPe Domain Sequences for d1vicb_:

Sequence, based on SEQRES records:

>d1vicb_ c.68.1.13 (B:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
sftviiparfassrlpgkpladikgkpmiqhvfekalqsgasrviiatdnenvadvaksf
gaevcmtsvnhnsgterlaevveklaipdneiivniqgdeplippvivrqvadnlakfnv
nmaslavkihdaeelfnpnavkvltdkdgyvlyfsrsvipydrdqfmnlqdvqkvqlsda
ylrhigiyayragfikqyvqwaptqlenlekleqlrvlyngerihvelakevpavgvdta
edlekvrailaan

Sequence, based on observed residues (ATOM records):

>d1vicb_ c.68.1.13 (B:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
sftviiparfassrlpgkpladikgkpmiqhvfekalqsgasrviiatdnenvadvaksf
gaevcmtsvnhnsgterlaevveklaipdneiivniqgdeplippvivrqvadnlakfnv
nmaslavkihdaeelfnpnavkvltdkdgyvlyfsrsvipydrdqfmnkvqlsdaylrhi
giyayragfikqyvqwaptqlenlekleqlrvlyngerihvelakevpavgvdtaedlek
vrailaan

Timeline for d1vicb_:

• d1vicb_ first appeared in SCOP 1.67
  
• d1vicb_ appears in SCOPe 2.07