SCOPe 2.05: Domain d1vgzb_: 1vgz B:

Lineage for d1vgzb_ (1vgz B:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.13: Cytidylytransferase [68901] (7 proteins)

6. Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140] (4 species)

7. Species Neisseria gonorrhoeae [TaxId:485] [102605] (2 PDB entries)

8. Domain d1vgzb_: 1vgz B: [100625]
   structural genomics
   complexed with so4

Details for d1vgzb_

PDB Entry: 1vgz, 3 Å

PDB Description: crystal structure of 4-diphosphocytidyl-2c-methyl-d-erythritol synthase

PDB Compounds: (B:) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

SCOPe Domain Sequences for d1vgzb_:

Sequence, based on SEQRES records:

>d1vgzb_ c.68.1.13 (B:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}
krknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspedtf
adkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpseala
rlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaa
enlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllld

Sequence, based on observed residues (ATOM records):

>d1vgzb_ c.68.1.13 (B:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}
krknialipapkqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqtafpqv
rvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqagnaae
ggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaaitdeasavekl
gvrplliqgdarnlkltqpqdayivrllld

Timeline for d1vgzb_:

• d1vgzb_ first appeared in SCOP 1.67
  
• d1vgzb_ appears in SCOPe 2.04
  
• d1vgzb_ appears in SCOPe 2.06
  
• d1vgzb_ appears in the current release, SCOPe 2.08