Lineage for d1vgyb1 (1vgy B:2-180,B:294-376)

  1. Root: SCOP 1.69
  2. 473232Class c: Alpha and beta proteins (a/b) [51349] (136 folds)
  3. 488901Fold c.56: Phosphorylase/hydrolase-like [53162] (6 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 489247Superfamily c.56.5: Zn-dependent exopeptidases [53187] (6 families) (S)
    core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest
  5. 489335Family c.56.5.4: Bacterial dinuclear zinc exopeptidases [53204] (9 proteins)
  6. 489388Protein Succinyl-diaminopimelate desuccinylase, catalytic domain [102509] (1 species)
  7. 489389Species Neisseria meningitidis [TaxId:487] [102510] (1 PDB entry)
  8. 489391Domain d1vgyb1: 1vgy B:2-180,B:294-376 [100622]
    Other proteins in same PDB: d1vgya2, d1vgyb2
    structural genomics

Details for d1vgyb1

PDB Entry: 1vgy (more details), 1.9 Å

PDB Description: crystal structure of succinyl diaminopimelate desuccinylase

SCOP Domain Sequences for d1vgyb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vgyb1 c.56.5.4 (B:2-180,B:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis}
tetqslelakelisrpsvtpddrdcqklmaerlhkigfaaeemhfgntkniwlrrgtkap
vvcfaghtdvvptgpvekwdsppfepaerdgrlygrgaadmktsiacfvtacerfvakhp
nhqgsiallitsdeegdaldgttkvvdvlkardelidycivgeptavdklgdmikngrrX
pfltqagkltdvaraaiaetcgieaelsttggtsdgrfikamaqelielgpsnatihqin
envrlndipklsavyegilvrll

SCOP Domain Coordinates for d1vgyb1:

Click to download the PDB-style file with coordinates for d1vgyb1.
(The format of our PDB-style files is described here.)

Timeline for d1vgyb1:

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Domains from same chain:
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d1vgyb2