SCOPe 2.08: Domain d1vgyb1: 1vgy B:2-180,B:294-376

Lineage for d1vgyb1 (1vgy B:2-180,B:294-376)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
   core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

4. Superfamily c.56.5: Zn-dependent exopeptidases [53187] (10 families)
   core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest

5. Family c.56.5.4: Bacterial dinuclear zinc exopeptidases [53204] (18 proteins)

6. Protein Succinyl-diaminopimelate desuccinylase, catalytic domain [102509] (1 species)

7. Species Neisseria meningitidis [TaxId:487] [102510] (1 PDB entry)

8. Domain d1vgyb1: 1vgy B:2-180,B:294-376 [100622]
   Other proteins in same PDB: d1vgya2, d1vgyb2
   structural genomics

Details for d1vgyb1

PDB Entry: 1vgy, 1.9 Å

PDB Description: crystal structure of succinyl diaminopimelate desuccinylase

PDB Compounds: (B:) succinyl-diaminopimelate desuccinylase

SCOPe Domain Sequences for d1vgyb1:

Sequence; same for both SEQRES and ATOM records:

>d1vgyb1 c.56.5.4 (B:2-180,B:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}
tetqslelakelisrpsvtpddrdcqklmaerlhkigfaaeemhfgntkniwlrrgtkap
vvcfaghtdvvptgpvekwdsppfepaerdgrlygrgaadmktsiacfvtacerfvakhp
nhqgsiallitsdeegdaldgttkvvdvlkardelidycivgeptavdklgdmikngrrX
pfltqagkltdvaraaiaetcgieaelsttggtsdgrfikamaqelielgpsnatihqin
envrlndipklsavyegilvrll

Timeline for d1vgyb1:

• d1vgyb1 first appeared in SCOP 1.67
  
• d1vgyb1 appears in SCOPe 2.07