SCOPe 2.08: Domain d1vgua_: 1vgu A:

Lineage for d1vgua_ (1vgu A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.13: Cytidylytransferase [68901] (7 proteins)

6. Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140] (4 species)

7. Species Escherichia coli [TaxId:562] [64141] (6 PDB entries)

8. Domain d1vgua_: 1vgu A: [100606]
   structural genomics

Details for d1vgua_

PDB Entry: 1vgu, 2.8 Å

PDB Description: crystal structure of 4-diphosphocytidyl-2c-methyl-d-erythritol synthase

PDB Compounds: (A:) 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase

SCOPe Domain Sequences for d1vgua_:

Sequence, based on SEQRES records:

>d1vgua_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
ldvcavvpaagfgrrmqtecpkqylsignqtilehsvhallahprvkrvviaispgdsrf
aqlplanhpqitvvdggderadsvlaglkaagdaqwvlvhdaarpclhqddlarllalse
tsrtggilaapvrdtmkraepgknaiahtvdrnglwhaltpqffprellhdcltralneg
atitdeasaleycgfhpqlvegradnikvtrpedlalaefyltr

Sequence, based on observed residues (ATOM records):

>d1vgua_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
ldvcavvpacpkqylsignqtilehsvhallahprvkrvviaispgdsrfaqlplanhpq
itvvdggderadsvlaglkaagdaqwvlvhdaarpclhqddlarllalsetsrtggilaa
pvrdtmkraepgknaiahtvdrnglwhaltpqffprellhdcltralnegatitdeasal
eycgfhpqlvegradnikvtrpedlalaefyltr

Timeline for d1vgua_:

• d1vgua_ first appeared in SCOP 1.67
  
• d1vgua_ appears in SCOPe 2.07