SCOPe 2.08: Domain d1vgtb_: 1vgt B:

Lineage for d1vgtb_ (1vgt B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.13: Cytidylytransferase [68901] (7 proteins)

6. Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140] (4 species)

7. Species Escherichia coli [TaxId:562] [64141] (6 PDB entries)

8. Domain d1vgtb_: 1vgt B: [100605]
   structural genomics

Details for d1vgtb_

PDB Entry: 1vgt, 1.8 Å

PDB Description: crystal structure of 4-diphosphocytidyl-2c-methyl-d-erythritol synthase

PDB Compounds: (B:) 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase

SCOPe Domain Sequences for d1vgtb_:

Sequence, based on SEQRES records:

>d1vgtb_ c.68.1.13 (B:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
ldvcavvpaagfgrrmqtecpkqylsignqtilehsvhallahprvkrvviaispgdsrf
aqlplanhpqitvvdggderadsvlaglkaagdaqwvlvhdaarpclhqddlarllalse
tsrtggilaapvrdtmkraepgknaiahtvdrnglwhaltpqffprellhdcltralneg
atitdeasaleycgfhpqlvegradnikvtrpedlalaefyltr

Sequence, based on observed residues (ATOM records):

>d1vgtb_ c.68.1.13 (B:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
ldvcavvpaagfgpkqylsignqtilehsvhallahprvkrvviaispgdsrfaqlplan
hpqitvvdggderadsvlaglkaagdaqwvlvhdaarpclhqddlarllalsetsrtggi
laapvrdtmkraepgknaiahtvdrnglwhaltpqffprellhdcltralnegatitdea
saleycgfhpqlvegradnikvtrpedlalaefyltr

Timeline for d1vgtb_:

• d1vgtb_ first appeared in SCOP 1.67
  
• d1vgtb_ appears in SCOPe 2.07