Statistics

SCOP 1.59 statistics:
15985 PDB entries (released/updated prior to 2002-03-01). 39893 Domains. 24 Literature references.

Class Number of folds Number of superfamilies Number of families
a: All alpha proteins 151 252 393
b: All beta proteins 110 205 337
c: Alpha and beta proteins (a/b) 113 185 438
d: Alpha and beta proteins (a+b) 208 295 454
e: Multi-domain proteins (alpha and beta) 34 34 46
f: Membrane and cell surface proteins and peptides 12 19 31
g: Small proteins 58 83 128
Totals686 (38 new) 1073 (67 new) 1827 (131 new)

All SCOP and SCOPe Releases based on Stable Identifiers

SCOP Releases Prior to Stable Identifiers

  • SCOP 1.53 (Sep 2000)
  • SCOP 1.50 (Apr 2000)
  • SCOP 1.48 (Dec 1999)

History

All changes between releases SCOP 1.57 and SCOP 1.59:

Changes in SCOP 1.59 of type Obsolete reference:

  1. ds008__: s008 - [16147] → obsolete
  2. ds038__: s038 - [33792] → obsolete
  3. ds050__: s050 - [40691] → obsolete
  4. ds063_1: s063 154-194 [46168] → obsolete

Changes in SCOP 1.59 of type Obsolete PDB:

  1. d1fznd_: 1fzn D: [19006] → obsolete
  2. d1dkva1: 1dkv A:515-700 [17374] → obsolete
  3. d1dkvb_: 1dkv B: [17364] → obsolete
  4. d1alo_1: 1alo 81-193 [17908] → obsolete
  5. d1dkva2: 1dkv A:356-514 [23673] → obsolete
  6. d1i99e_: 1i99 E: [62080] → obsolete
  7. d1dkva3: 1dkv A:2-355 [37105] → obsolete
  8. d1alo_2: 1alo 1-80 [37693] → obsolete
  9. d1alo_3: 1alo 194-310 [38584] → obsolete
  10. d2fxb__: 2fxb - [38997] → obsolete
  11. d1alo_4: 1alo 311-907 [41414] → obsolete
  12. d1i99i_: 1i99 I: [62081] → obsolete

Changes in SCOP 1.59 of type Obsolete NOC:

  1. d0exa_1: 0exa 1-1 [24271] → obsolete
  2. d0exa_2: 0exa 2-2 [43401] → obsolete

Changes in SCOP 1.59 of type Merge:

  1. Superfamily c.47.3: Thioredoxin-like 2Fe-2S ferredoxin [52917] →
    Superfamily c.47.1: Thioredoxin-like [52833]
  2. Family c.68.1.11: 4-diphosphocytidyl-2-c-methylerythritol (CDP-me) synthase (YgbP) [64139] →
    Family c.68.1.13: Cytidylytransferase [68901]
  3. Family c.68.1.12: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase, KdsB [64142] →
    Family c.68.1.13: Cytidylytransferase [68901]
  4. Protein Histone A [47130] from a.22.1.2: Archaeal histone
    Protein Archaeal histone [68897] from a.22.1.2: Archaeal histone
  5. Protein Histone B [47132] from a.22.1.2: Archaeal histone
    Protein Archaeal histone [68897] from a.22.1.2: Archaeal histone
  6. Protein Cellobiohydrolase I (cellulase), CBH1, Cel7A [49972] from b.29.1.10: Endoglucanase/cellulase I catalitic core
    Protein Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) [68900] from b.29.1.10: Glycosyl hydrolase family 7 catalitic core
  7. Protein Endoglucanase I [49974] from b.29.1.10: Endoglucanase/cellulase I catalitic core
    Protein Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) [68900] from b.29.1.10: Glycosyl hydrolase family 7 catalitic core

Changes in SCOP 1.59 of type Split:

  1. Family d.4.1.4: Recombination endonuclease VII [54072] →
    Family d.4.1.5: Recombination endonuclease VII, C-terminal and dimerization domains [68915]
  2. Protein Pax-6 [46749] from a.4.1.5: Paired domain
    Protein Pax-6 [68936] from a.4.1.5: Paired domain
  3. Protein Photosystem II D1 C-terminal processing protease, PDZ domain [50170] from b.36.1.1: PDZ domain
    Protein Photosystem II D1 C-terminal processing protease [68934] from b.36.1.3: Tail specific protease PDZ domain
  4. Protein Rho termination factor, N-terminal, RNA-binding domain [50294] from b.40.4.5: Cold shock DNA-binding domain-like
    Protein Rho termination factor, RNA-binding domain [68910] from b.40.4.5: Cold shock DNA-binding domain-like
  5. Protein Photosystem II D1 C-terminal processing protease, catalytic domain [52101] from c.14.1.2: Photosystem II D1 C-terminal processing protease, catalytic domain
    Protein Photosystem II D1 C-terminal processing protease [68935] from c.14.1.2: Tail specific protease, catalytic domain
  6. Protein Protein-L-isoaspartate O-methyltransferase [53355] from c.66.1.7: Protein-L-isoaspartate O-methyltransferase
    Protein Protein-L-isoaspartyl O-methyltransferase [68927] from c.66.1.7: Protein-L-isoaspartyl O-methyltransferase
  7. Protein Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-liase) [53797] from c.91.1.1: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-liase)
    Protein Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-liase) [68921] from c.91.1.1: PEP carboxykinase C-terminal domain
  8. Protein Recombination endonuclease VII [54073] from d.4.1.4: Recombination endonuclease VII
    Protein Recombination endonuclease VII, C-terminal and dimerization domains [68916] from d.4.1.5: Recombination endonuclease VII, C-terminal and dimerization domains
  9. Protein Ku70 subunit [64503] from e.31.1.1: Ku70 subunit
    Protein Ku70 subunit [68905] from e.31.1.1: Ku70 subunit
  10. Species Human (Homo sapiens), beta and gamma [TaxId:9606] [56499] from d.171.1.1 Fibrinogen C-terminal domains
    Species Human (Homo sapiens), beta [TaxId:9606] [68903] from d.171.1.1 Fibrinogen C-terminal domains, Species Human (Homo sapiens), gamma [TaxId:9606] [68904] from d.171.1.1 Fibrinogen C-terminal domains
  11. d6paxa_: 6pax A: [16046] →
    d6paxa1: 6pax A:1-68 [64758], d6paxa2: 6pax A:69-133 [64759]
  12. d1a62__: 1a62 - [25332] →
    d1a62_1: 1a62 1-47 [64708], d1a62_2: 1a62 48-125 [64709]
  13. d1a8va_: 1a8v A: [25333] →
    d1a8va1: 1a8v A:-1-47 [64712], d1a8va2: 1a8v A:48-118 [64713]
  14. d1a8vb_: 1a8v B: [25334] →
    d1a8vb1: 1a8v B:-1-47 [64714], d1a8vb2: 1a8v B:48-118 [64715]
  15. d2a8va_: 2a8v A: [25335] →
    d2a8va1: 2a8v A:1-47 [64752], d2a8va2: 2a8v A:48-118 [64753]
  16. d2a8vb_: 2a8v B: [25336] →
    d2a8vb1: 2a8v B:1-47 [64754], d2a8vb2: 2a8v B:48-118 [64755]
  17. d2a8vc_: 2a8v C: [25337] →
    d2a8vc1: 2a8v C:1-47 [64756], d2a8vc2: 2a8v C:48-118 [64757]
  18. d1a63__: 1a63 - [25338] →
    d1a63_1: 1a63 1-47 [64710], d1a63_2: 1a63 48-130 [64711]
  19. d1ig8a_: 1ig8 A: [62366] →
    d1ig8a1: 1ig8 A:18-224 [64746], d1ig8a2: 1ig8 A:225-486 [64747]
  20. d1dl5a_: 1dl5 A: [34201] →
    d1dl5a1: 1dl5 A:1-213 [64720], d1dl5a2: 1dl5 A:214-317 [64721]
  21. d1dl5b_: 1dl5 B: [34202] →
    d1dl5b1: 1dl5 B:1-213 [64722], d1dl5b2: 1dl5 B:214-316 [64723]
  22. d1ayl__: 1ayl - [35589] →
    d1ayl_1: 1ayl 228-540 [64718], d1ayl_2: 1ayl 1-227 [64719]
  23. d1oen__: 1oen - [35590] →
    d1oen_1: 1oen 228-540 [64750], d1oen_2: 1oen 6-227 [64751]
  24. d1aq2__: 1aq2 - [35591] →
    d1aq2_1: 1aq2 228-540 [64716], d1aq2_2: 1aq2 4-227 [64717]
  25. d1e7la_: 1e7l A: [59345] →
    d1e7la1: 1e7l A:104-157 [64728], d1e7la2: 1e7l A:1-103 [64729]
  26. d1e7lb_: 1e7l B: [59346] →
    d1e7lb1: 1e7l B:104-157 [64730], d1e7lb2: 1e7l B:1-103 [64731]
  27. d1en7a_: 1en7 A: [37161] →
    d1en7a1: 1en7 A:104-157 [64733], d1en7a2: 1en7 A:1-103 [64734]
  28. d1en7b_: 1en7 B: [37162] →
    d1en7b1: 1en7 B:104-157 [64735], d1en7b2: 1en7 B:1-103 [64736]
  29. d1e7da_: 1e7d A: [59342] →
    d1e7da1: 1e7d A:104-157 [64724], d1e7da2: 1e7d A:1-103 [64725]
  30. d1e7db_: 1e7d B: [59343] →
    d1e7db1: 1e7d B:104-157 [64726], d1e7db2: 1e7d B:1-103 [64727]
  31. d1jeqa_: 1jeq A: [62921] →
    d1jeqa1: 1jeq A:559-609 [64748], d1jeqa2: 1jeq A:35-538 [64749]

Changes in SCOP 1.59 of type Move:

  1. Fold e.21: HAD-like [56783] →
    Fold c.108: HAD-like [56783]
  2. Superfamily a.24.6: Acyl-CoA dehydrogenase (flavoprotein), C-terminal domain [47203] →
    Superfamily a.29.3: Acyl-CoA dehydrogenase (flavoprotein), C-terminal domain [47203]
  3. Superfamily a.29.1: Domain of the SRP/SRP receptor G-proteins [47364] →
    Superfamily a.24.13: Domain of the SRP/SRP receptor G-proteins [47364]
  4. Superfamily e.21.1: HAD-like [56784] →
    Superfamily c.108.1: HAD-like [56784]
  5. Family a.24.6.1: Acyl-CoA dehydrogenase (flavoprotein), C-terminal domain [47204] →
    Family a.29.3.1: Acyl-CoA dehydrogenase (flavoprotein), C-terminal domain [47204]
  6. Family a.29.1.1: Domain of the SRP/SRP receptor G-proteins [47365] →
    Family a.24.13.1: Domain of the SRP/SRP receptor G-proteins [47365]
  7. Family e.21.1.1: L-2-Haloacid dehalogenase, HAD [56785] →
    Family c.108.1.1: L-2-Haloacid dehalogenase, HAD [56785]
  8. Family e.21.1.2: Epoxide hydrolase, N-terminal domain [56789] →
    Family c.108.1.2: Epoxide hydrolase, N-terminal domain [56789]
  9. Family e.21.1.3: Phosphonoacetaldehyde hydrolase [56792] →
    Family c.108.1.3: Phosphonoacetaldehyde hydrolase [56792]
  10. Family e.21.1.4: Phosphoserine phosphatase [64511] →
    Family c.108.1.4: Phosphoserine phosphatase [64511]
  11. Protein Calcium vector protein [63539] from a.39.1.5: Calmodulin-like
    Protein Calcium vector protein [47514] from a.39.1.5: Calmodulin-like
  12. Protein Exo-beta-(1,3)-glucanase [51505] from c.1.8.3: beta-glycanases
    Protein Exo-beta-(1,3)-glucanase [51495] from c.1.8.3: beta-glycanases
  13. Species Amphioxus (Branchiostoma lanceolatum) [TaxId:7740] [63540] from a.39.1.5 Calcium vector protein
    Species Amphioxus (Branchiostoma lanceolatum) [TaxId:7740] [47515] from a.39.1.5 Calcium vector protein
  14. Species Bactericidal Fab (mouse), kappa L chain [48826] from b.1.1.1 Immunoglobulin (variable domains of L and H chains)
    Species Bactericidal Fab MN12H2, (mouse), kappa L chain [48874] from b.1.1.1 Immunoglobulin (variable domains of L and H chains)
  15. Species Bactericidal Fab (mouse), kappa L chain [49042] from b.1.1.2 Immunoglobulin (constant domains of L and H chains)
    Species Bactericidal Fab MN12H2, (mouse), kappa L chain [49084] from b.1.1.2 Immunoglobulin (constant domains of L and H chains)
  16. Species Yeast (Candida albicans) [TaxId:5476] [51506] from c.1.8.3 Exo-beta-(1,3)-glucanase
    Species Yeast (Candida albicans) [TaxId:5476] [51496] from c.1.8.3 Exo-beta-(1,3)-glucanase

Changes in SCOP 1.59 of type Modification:

  1. d1fc6a1: 1fc6 A:78-252 [24783] →
    d1fc6a3: 1fc6 A:157-248 [64738]
  2. d1fc6a1: 1fc6 A:78-252 [24783] →
    d1fc6a4: 1fc6 A:78-156,A:249-463 [64739]
  3. d1fc7a1: 1fc7 A:78-252 [24784] →
    d1fc7a4: 1fc7 A:78-156,A:249-463 [64741]
  4. d1fc7a1: 1fc7 A:78-252 [24784] →
    d1fc7a3: 1fc7 A:157-248 [64740]
  5. d1fc9a1: 1fc9 A:78-252 [24785] →
    d1fc9a3: 1fc9 A:157-248 [64742]
  6. d1fc9a1: 1fc9 A:78-252 [24785] →
    d1fc9a4: 1fc9 A:78-156,A:249-463 [64743]
  7. d1fcfa1: 1fcf A:77-252 [24786] →
    d1fcfa3: 1fcf A:157-248 [64744]
  8. d1fcfa1: 1fcf A:77-252 [24786] →
    d1fcfa4: 1fcf A:77-156,A:249-463 [64745]
  9. d1fc6a2: 1fc6 A:253-463 [30899] →
    d1fc6a3: 1fc6 A:157-248 [64738]
  10. d1fc6a2: 1fc6 A:253-463 [30899] →
    d1fc6a4: 1fc6 A:78-156,A:249-463 [64739]
  11. d1fc7a2: 1fc7 A:253-463 [30900] →
    d1fc7a3: 1fc7 A:157-248 [64740]
  12. d1fc7a2: 1fc7 A:253-463 [30900] →
    d1fc7a4: 1fc7 A:78-156,A:249-463 [64741]
  13. d1fc9a2: 1fc9 A:253-463 [30901] →
    d1fc9a3: 1fc9 A:157-248 [64742]
  14. d1fc9a2: 1fc9 A:253-463 [30901] →
    d1fc9a4: 1fc9 A:78-156,A:249-463 [64743]
  15. d1fcfa2: 1fcf A:253-463 [30902] →
    d1fcfa3: 1fcf A:157-248 [64744]
  16. d1fcfa2: 1fcf A:253-463 [30902] →
    d1fcfa4: 1fcf A:77-156,A:249-463 [64745]
  17. d1etu__: 1etu - [32121] →
    d1etu_1: 1etu 5-200 [64737]
  18. d1efm__: 1efm - [32122] →
    d1efm_1: 1efm 12-190 [64732]

Changes in SCOP 1.59 of type Rename:

  1. Species Methanothermus fervidus [TaxId:2180] [47131] from a.22.1.2 Histone A
    Species Archaeon Methanothermus fervidus, histone A [TaxId:2180] [68895] from a.22.1.2 Archaeal histone
  2. Species Methanothermus fervidus [TaxId:2180] [47133] from a.22.1.2 Histone B
    Species Archaeon Methanothermus fervidus, histone B [TaxId:2180] [68896] from a.22.1.2 Archaeal histone
  3. Species Trichoderma reesei [TaxId:51453] [49973] from b.29.1.10 Cellobiohydrolase I (cellulase), CBH1, Cel7A
    Species Trichoderma reesei, Cel7A [TaxId:51453] [68898] from b.29.1.10 Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1)
  4. Species Trichoderma reesei [TaxId:51453] [49975] from b.29.1.10 Endoglucanase I
    Species Trichoderma reesei, Endoglucanase I [TaxId:51453] [68899] from b.29.1.10 Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1)

Change in SCOP 1.59 of type Substitute:

  1. Family c.47.3.1: Thioredoxin-like 2Fe-2S ferredoxin [52918] →
    Family c.47.1.11: Thioredoxin-like 2Fe-2S ferredoxin [52918]