Lineage for d5yhqc_ (5yhq C:)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. Protein automated matches [190854] (26 species)
    not a true protein
  7. Species Coxsackievirus a6 [TaxId:86107] [339711] (2 PDB entries)
  8. Domain d5yhqc_: 5yhq C: [340797]
    automated match to d5c8cc_

Details for d5yhqc_

PDB Entry: 5yhq (more details), 3 Å

PDB Description: cryo-em structure of cva6 vlp
PDB Compounds: (C:) capsid protein vp3

SCOPe Domain Sequences for d5yhqc_:

Sequence, based on SEQRES records: (download)

>d5yhqc_ b.121.4.1 (C:) automated matches {Coxsackievirus a6 [TaxId: 86107]}
glptelkpgtnqflttddgtsppilpgfeptplihipgeftslldlcrietilevnnttg
ttgvnrllipvraqnnvdqlcasfqvdpgrngpwqstmvgqicryytqwsgslkvtfmft
gsfmatgkmliaytppgsaqpttreaamlgthivwdfglqssvtlvipwisnthfravkt
ggvydyyatgivtiwyqtnfvvppdtpseaniialgaaqenftlklckdtdeirqtaeyq

Sequence, based on observed residues (ATOM records): (download)

>d5yhqc_ b.121.4.1 (C:) automated matches {Coxsackievirus a6 [TaxId: 86107]}
glptelkpgtnqflttddgtsppilpgfeptplihipgeftslldlcrietilevnnttg
ttgvnrllipvraqnnvdqlcasfqvdpgrngpwqstmvgqicryytqwsgslkvtfmft
gsfmatgkmliaytppgsaqpttreaamlgthivwdfglqssvtlvipwisnthfatgiv
tiwyqtnfvvppdtpseaniialgaaqenftlklckdtdeirqtaeyq

SCOPe Domain Coordinates for d5yhqc_ are not available.

Timeline for d5yhqc_: