Lineage for d4npya1 (4npy A:1-106A)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2031996Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2031997Protein automated matches [190740] (28 species)
    not a true protein
  7. 2032126Species Human (Homo sapiens) [TaxId:9606] [187920] (935 PDB entries)
  8. 2032385Domain d4npya1: 4npy A:1-106A [235828]
    automated match to d4npyl1
    complexed with gol

Details for d4npya1

PDB Entry: 4npy (more details), 1.8 Å

PDB Description: crystal structure of germline fab pgt121, a putative precursor of the broadly reactive and potent hiv-1 neutralizing antibody
PDB Compounds: (A:) germline PGT121 light chain

SCOPe Domain Sequences for d4npya1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4npya1 b.1.1.0 (A:1-106A) automated matches {Human (Homo sapiens) [TaxId: 9606]}
syvltqppsvsvapgqtaritcggnnigsksvhwyqqkpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrveagdeadyycqvwdsrgptnwvfgggtkltvl

SCOPe Domain Coordinates for d4npya1:

Click to download the PDB-style file with coordinates for d4npya1.
(The format of our PDB-style files is described here.)

Timeline for d4npya1:

2032385
d4npya1 in context of chain
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d4npya2