Lineage for d3s9ea_ (3s9e A:)

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1879042Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 1879043Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 1880254Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 1880255Protein automated matches [190039] (120 species)
    not a true protein
  7. 1880645Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (78 PDB entries)
  8. 1880666Domain d3s9ea_: 3s9e A: [216257]
    automated match to d4igra_
    complexed with cl, glu, gol, na, po4

Details for d3s9ea_

PDB Entry: 3s9e (more details), 1.6 Å

PDB Description: crystal structure of the kainate receptor gluk3 ligand binding domain in complex with (s)-glutamate
PDB Compounds: (A:) Glutamate receptor, ionotropic kainate 3

SCOPe Domain Sequences for d3s9ea_:

Sequence, based on SEQRES records: (download)

>d3s9ea_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
gtnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgk
ygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpi
dsaddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtl
tadyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeed
klhimkekwwrgsgcp

Sequence, based on observed residues (ATOM records): (download)

>d3s9ea_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
gtnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgk
ygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpi
dsaddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtl
tadyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeed
klhimkekwwrcp

SCOPe Domain Coordinates for d3s9ea_:

Click to download the PDB-style file with coordinates for d3s9ea_.
(The format of our PDB-style files is described here.)

Timeline for d3s9ea_: