Lineage for d2q1ub_ (2q1u B:)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2449371Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2449372Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2454167Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2454168Protein automated matches [190069] (309 species)
    not a true protein
  7. 2454589Species Bordetella bronchiseptica [TaxId:518] [225344] (8 PDB entries)
  8. 2454593Domain d2q1ub_: 2q1u B: [243518]
    automated match to d1r6da_
    complexed with gol, nad, udp

Details for d2q1ub_

PDB Entry: 2q1u (more details), 1.7 Å

PDB Description: Crystal structure of the Bordetella bronchiseptica enzyme WbmF in complex with NAD+ and UDP
PDB Compounds: (B:) Putative nucleotide sugar epimerase/ dehydratase

SCOPe Domain Sequences for d2q1ub_:

Sequence, based on SEQRES records: (download)

>d2q1ub_ c.2.1.0 (B:) automated matches {Bordetella bronchiseptica [TaxId: 518]}
asklantnvmvvggagfvgsnlvkrllelgvnqvhvvdnllsaekinvpdhpavrfsets
itddallaslqdeydyvfhlatyhgnqssihdpladhenntlttlklyerlkhfkrlkkv
vysaagcsiaektfddakateetdivslhnndspysmskifgefysvyyhkqhqlptvra
rfqnvygpgeilgagrwrgtpatvwrnvtptfiykalkgmplplenggvatrdfifvedv
angliacaadgtpggvyniasgketsiadlatkineitgnnteldrlpkrpwdnsgkrfg
spekarrelgfsadvsiddglrktiewtkanlavieqimrkhdsalaty

Sequence, based on observed residues (ATOM records): (download)

>d2q1ub_ c.2.1.0 (B:) automated matches {Bordetella bronchiseptica [TaxId: 518]}
asklantnvmvvggagfvgsnlvkrllelgvnqvhvvdnllsaekinvpdhpavrfsets
itddallaslqdeydyvfhlatyhgnqssihdpladhenntlttlklyerlkhfkrlkkv
vysaageetdivslhnndspysmskifgefysvyyhkqhqlptvrarfqnvygpgeilga
grwrgtpatvwrnvtptfiykalkgmplplenggvatrdfifvedvangliacaadgtpg
gvyniasgketsiadlatkineitgnnteldrlpkrpwdnsgkrfgspekarrelgfsad
vsiddglrktiewtkanlavieqimrkhdsalaty

SCOPe Domain Coordinates for d2q1ub_:

Click to download the PDB-style file with coordinates for d2q1ub_.
(The format of our PDB-style files is described here.)

Timeline for d2q1ub_: