Lineage for d2pgga1 (2pgg A:31-804)

  1. Root: SCOPe 2.05
  2. 1949014Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1951566Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1951567Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1952391Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)
  6. 1952399Protein Viral RNA polymerase [56695] (17 species)
  7. 1952400Species Avian infectious bursal disease virus [TaxId:10995] [160955] (1 PDB entry)
    Uniprot Q9Q6Q5 31-804
  8. 1952401Domain d2pgga1: 2pgg A:31-804 [149462]

Details for d2pgga1

PDB Entry: 2pgg (more details), 2.5 Å

PDB Description: Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1
PDB Compounds: (A:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d2pgga1:

Sequence, based on SEQRES records: (download)

>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
llipkvwvppedplaspsrlakflrengykvlqprslpeneeyetdqilpdlawmrqieg
avlkptlslpigdqeyfpkyypthrpskekpnayppdiallkqmiylflqvpeaneglkd
evtlltqnirdkaygsgtymgqatrlvamkevatgrnpnkdplklgytfesiaqllditl
pvgppgeddkpwvpltrvpsrmlvltgdvdgdfevedylpkinlksssglpyvgrtkget
igemiaisnqflrelstllkqgagtkgsnkkkllsmlsdywylscgllfpkaerydkstw
ltktrniwsapspthlmismitwpvmsnspnnvlniegcpslykfnpfrgglnrivewil
apeepkalvyadniyivhsntwysidlekgeanctrqhmqaamyyiltrgwsdngdpmfn
qtwatfamniapalvvdssclimnlqiktygqgsgnaatfinnhllstlvldqwnlmrqp
rpdseefksiedklginfkiersiddirgklrqlvllaqpgylsggvepeqssptveldl
lgwsatyskdlgiyvpvldkerlfcsaaypkgvenkslkskvgieqaykvvryealrlvg
gwnypllnkacknnagaarrhleakgfpldeflaewselsefgeafegfnikltvtsesl
aelnkpvppkppnvnrpvntgglkavsnalktgryrneaglsglvllatarsrlqdavka
kaeaeklhkskpddpdadwfersetlsdllekadiaskvahsalvetsdaleav

Sequence, based on observed residues (ATOM records): (download)

>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
llipkvwvppedplaspsrlakflrengykvlqprslpeneeyetdqilpdlawmrqieg
avlkptlslpigdqeyfpkyypthrpskekpnayppdiallkqmiylflqvpeaneglkd
evtlltqnirdkaygsgtymgqatrlvamkevatgrnpnkdplklgytfesiaqllditl
pvgppgeddkpwvpltrvpsrmlvltgdvdgdfevedylpkinlksssglpyvgrtkget
igemiaisnqflrelstllkqgagtkgsnkkkllsmlsdywylscgllfpkaerydkstw
ltktrniwsapspthlmismitwpvmsnspnnvlniegcpslykfnpfrgglnrivewil
apeepkalvyadniyivhsntwysidlekgeanctrqhmqaamyyiltrgwsdngdpmfn
qtwatfamniapalvvdssclimnlqiktygqgsgnaatfinnhllstlvldqwnlmrqp
rpdseefksiedklginfkiersiddirgklrqlvllaqpgylsggvepeqssptveldl
lgwsatyskdlgiyvpvldkerlfcsaaypkgvgieqaykvvryealrlvggwnypllnk
acknnagaarrhleakgfpldeflaewselsefgeafegfnikltvtseslaelnkpvpp
kppnvnrpvntgglkavsnalktgryrneaglsglvllatarsrlqdavkakaeaeklhk
skpddpdadwfersetlsdllekadiaskvahsalvetsdaleav

SCOPe Domain Coordinates for d2pgga1:

Click to download the PDB-style file with coordinates for d2pgga1.
(The format of our PDB-style files is described here.)

Timeline for d2pgga1: