Lineage for d2ivda1 (2ivd A:10-306,A:415-464)
- Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meanderSuperfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families) 
Family c.3.1.2: FAD-linked reductases, N-terminal domain [51913] (18 proteins)
C-terminal domain is alpha+beta is common for the family
Protein Protoporphyrinogen oxidase [102183] (2 species) Species Myxococcus xanthus [TaxId:34] [159429] (2 PDB entries)
Uniprot P56601 10-306,415-464
Domain d2ivda1: 2ivd A:10-306,A:415-464 [147805]
Other proteins in same PDB: d2ivda2, d2ivdb2
complexed with acj, fad, gol, twn
Details for d2ivda1
PDB Entry: 2ivd (more details), 2.3 Å
PDB Description: structure of protoporphyrinogen oxidase from myxococcus xanthus with acifluorfen
PDB Compounds: (A:) protoporphyrinogen oxidaseSCOPe Domain Sequences for d2ivda1:
Sequence, based on SEQRES records: (download)
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
mnvavvgggisglavahhlrsrgtdavllessarlggavgthalagylveqgpnsfldre
patralaaalnlegriraadpaakrryvytrgrlrsvpasppaflasdilplgarlrvag
elfsrrapegvdeslaafgrrhlghratqvlldavqtgiyagdveqlsvaatfpmlvkme
rehrslilgairaqkaqrqaalpagtapklsgalstfdgglqvlidalaaslgdaahvga
rveglaredggwrliieehgrraelsvaqvvlaapahatakllrplddalaalvagiXyn
lghlervaaidaalqrlpglhlignaykgvglndcirnaaqladalva
Sequence, based on observed residues (ATOM records): (download)
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
mnvavvgggisglavahhlrsrgtdavllessarlggavgthalagylveqgpnsfldre
patralaaalnlegriraadpaakrryvytrgrlrsvpasppaflasdilplgarlrvag
elfsrrapegvdeslaafgrrhlghratqvlldavqtgiyagdveqlsvaatfpmlvkme
rehrslilgairaqkaqrqagtapklsgalstfdgglqvlidalaaslgdaahvgarveg
laregwrliieehgrraelsvaqvvlaapahatakllrplddalaalvagiXynlghler
vaaidaalqrlpglhlignaykgvglndcirnaaqladalva
SCOPe Domain Coordinates for d2ivda1:
Click to download the PDB-style file with coordinates for d2ivda1.
(The format of our PDB-style files is described here.)
(The format of our PDB-style files is described here.)
Timeline for d2ivda1:
- d2ivda1 first appeared in SCOP 1.75
- d2ivda1 appears in SCOPe 2.07
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