Lineage for d2fbjl1 (2fbj L:1-109)
- Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds) 
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families) 
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins) 
Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
Species Mouse (Mus musculus), cluster 3.4 [TaxId:10090] [88530] (4 PDB entries) 
Domain d2fbjl1: 2fbj L:1-109 [19850]
Other proteins in same PDB: d2fbjh1, d2fbjh2, d2fbjl2
part of Fab J539
complexed with zn
Details for d2fbjl1
PDB Entry: 2fbj (more details), 1.95 Å
PDB Description: refined crystal structure of the galactan-binding immunoglobulin fab j539 at 1.95-angstroms resolution
PDB Compounds: (L:) iga-kappa j539 fab (light chain)SCOPe Domain Sequences for d2fbjl1:
Sequence; same for both SEQRES and ATOM records: (download)
>d2fbjl1 b.1.1.1 (L:1-109) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.4 [TaxId: 10090]}
eivltqspaitaaslgqkvtitcsasssvsslhwyqqksgtspkpwiyeisklasgvpar
fsgsgsgtsysltintmeaedaaiyycqqwtyplitfgagtklelkrad
SCOPe Domain Coordinates for d2fbjl1:
Click to download the PDB-style file with coordinates for d2fbjl1.
(The format of our PDB-style files is described here.)
(The format of our PDB-style files is described here.)
Timeline for d2fbjl1:
- d2fbjl1 first appeared (with stable ids) in SCOP 1.55
- d2fbjl1 appears in SCOPe 2.05
- d2fbjl1 appears in SCOPe 2.07
- d2fbjl1 appears in the current release, SCOPe 2.08
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