Lineage for d1ymya2 (1ymy A:54-350)
- Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families) 
the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
Family c.1.9.10: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82261] (1 protein)
automatically mapped to Pfam PF01979Protein N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82262] (3 species) Species Escherichia coli [TaxId:562] [141808] (4 PDB entries)
Uniprot P0AF18 54-350
Domain d1ymya2: 1ymy A:54-350 [123709]
Other proteins in same PDB: d1ymya1, d1ymyb1
Details for d1ymya2
PDB Entry: 1ymy (more details), 2.6 Å
PDB Description: crystal structure of the n-acetylglucosamine-6-phosphate deacetylase from escherichia coli k12
PDB Compounds: (A:) N-acetylglucosamine-6-phosphate deacetylaseSCOPe Domain Sequences for d1ymya2:
Sequence, based on SEQRES records: (download)
>d1ymya2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
gfidvqlngcggvqfndtaeavsvetleimqkaneksgctnylptlittsdelmkqgvrv
mreylakhpnqalglhlegpwlnlvkkgthnpnfvrkpdaalvdflcenadvitkvtlap
emvpaevisklanagivvsaghsnatlkeakagfragitfathlynampyitgrepglag
aildeadiycgiiadglhvdyanirnakrlkgdklclvtdatapaganieqfifagktiy
yrnglcvdengtlsgssltmiegvrnlvehcgialdevlrmatlyparaigvekrlg
Sequence, based on observed residues (ATOM records): (download)
>d1ymya2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
gfidvqlngcggvqfndtaeavsvetleimqkaneksgctnylptlittsdelmkqgvrv
mreylakhpnqalglhlegpwlnlvpnfvrkpdaalvdflcenadvitkvtlapemvpae
visklanagivvsaghsnatlkeakagfragitfathlynampyitgrepglagaildea
diycgiiadglhvdyanirnakrlkgdklclvtdatapaganieqfifagktiyyrnglc
vdengtlsgssltmiegvrnlvehcgialdevlrmatlyparaigvekrlg
SCOPe Domain Coordinates for d1ymya2:
Click to download the PDB-style file with coordinates for d1ymya2.
(The format of our PDB-style files is described here.)
(The format of our PDB-style files is described here.)
Timeline for d1ymya2:
- d1ymya2 first appeared in SCOP 1.73
- d1ymya2 appears in SCOPe 2.07
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