Lineage for d1u04a2 (1u04 A:324-770)
- Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds) 
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the restSuperfamily c.55.3: Ribonuclease H-like [53098] (15 families) 
consists of one domain of this fold
Family c.55.3.10: PIWI domain [110640] (3 proteins)
Pfam PF02171
Protein Argonaute homologue PF0537 [110641] (1 species)
includes the middle domainSpecies Pyrococcus furiosus [TaxId:2261] [110642] (3 PDB entries)
Uniprot Q8U3D2
Domain d1u04a2: 1u04 A:324-770 [107540]
Other proteins in same PDB: d1u04a1
protein/RNA complex
Details for d1u04a2
PDB Entry: 1u04 (more details), 2.25 Å
PDB Description: crystal structure of full length argonaute from pyrococcus furiosus
PDB Compounds: (A:) hypothetical protein PF0537SCOPe Domain Sequences for d1u04a2:
Sequence, based on SEQRES records: (download)
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
iaqelenkirvrddkgnsvpisqlnvqksqlllwtnysrkypvilpyevpekfrkireip
mfiildsglladiqnfatnefrelvksmyyslakkynslakkarstneiglpfldfrgke
kvitedlnsdkgiievveqvssfmkgkelglafiaarnklssekfeeikrrlfnlnvisq
vvnedtlknkrdkydrnrldlfvrhnllfqvlsklgvkyyvldyrfnydyiigidvapmk
rsegyiggsavmfdsqgyirkivpikigeqrgesvdmneffkemvdkfkefnikldnkki
lllrdgritnneeeglkyisemfdievvtmdviknhpvrafanmkmyfnlggaiyliphk
lkqakgtpipiklakkriikngkvekqsitrqdvldifiltrlnygsisadmrlpapvhy
ahkfanairnewkikeeflaegflyfv
Sequence, based on observed residues (ATOM records): (download)
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
iaqelenkirvrddkgnsvpisqllwtnysrkypvilpyevpekfrkireipmfiildsg
lladiqnfatnefrelvksmyyekvitedlnsdkgiievveqvssfmkgkelglafiaar
nklssekfeeikrrlfnlnvisqvvnedtlknkrdkydrnrldlfvrhnllfqvlsklgv
kyyvldyrfnydyiigidvapmkrsegyiggsavmfdsqgyirkivpikigeqrgesvdm
neffkemvdkfkefnikldnkkilllrdgritnneeeglkyisemfdievvtmdviknhp
vrafanmkmyfnlggaiyliphklkqakgtpipiklakkriikngkvekqsitrqdvldi
filtrlnygsisadmrlpapvhyahkfanairnewkikeeflaegflyfv
SCOPe Domain Coordinates for d1u04a2:
Click to download the PDB-style file with coordinates for d1u04a2.
(The format of our PDB-style files is described here.)
(The format of our PDB-style files is described here.)
Timeline for d1u04a2:
- d1u04a2 first appeared in SCOP 1.69
- d1u04a2 appears in SCOPe 2.02
- d1u04a2 appears in SCOPe 2.04
- d1u04a2 last appears in SCOPe 2.05
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