Lineage for d1u04a2 (1u04 A:324-770)

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 995076Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 995888Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 996500Family c.55.3.10: PIWI domain [110640] (3 proteins)
    Pfam PF02171
  6. 996509Protein Argonaute homologue PF0537 [110641] (1 species)
    includes the middle domain
  7. 996510Species Pyrococcus furiosus [TaxId:2261] [110642] (3 PDB entries)
    Uniprot Q8U3D2
  8. 996511Domain d1u04a2: 1u04 A:324-770 [107540]
    Other proteins in same PDB: d1u04a1
    protein/RNA complex

Details for d1u04a2

PDB Entry: 1u04 (more details), 2.25 Å

PDB Description: crystal structure of full length argonaute from pyrococcus furiosus
PDB Compounds: (A:) hypothetical protein PF0537

SCOPe Domain Sequences for d1u04a2:

Sequence, based on SEQRES records: (download)

>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
iaqelenkirvrddkgnsvpisqlnvqksqlllwtnysrkypvilpyevpekfrkireip
mfiildsglladiqnfatnefrelvksmyyslakkynslakkarstneiglpfldfrgke
kvitedlnsdkgiievveqvssfmkgkelglafiaarnklssekfeeikrrlfnlnvisq
vvnedtlknkrdkydrnrldlfvrhnllfqvlsklgvkyyvldyrfnydyiigidvapmk
rsegyiggsavmfdsqgyirkivpikigeqrgesvdmneffkemvdkfkefnikldnkki
lllrdgritnneeeglkyisemfdievvtmdviknhpvrafanmkmyfnlggaiyliphk
lkqakgtpipiklakkriikngkvekqsitrqdvldifiltrlnygsisadmrlpapvhy
ahkfanairnewkikeeflaegflyfv

Sequence, based on observed residues (ATOM records): (download)

>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
iaqelenkirvrddkgnsvpisqllwtnysrkypvilpyevpekfrkireipmfiildsg
lladiqnfatnefrelvksmyyekvitedlnsdkgiievveqvssfmkgkelglafiaar
nklssekfeeikrrlfnlnvisqvvnedtlknkrdkydrnrldlfvrhnllfqvlsklgv
kyyvldyrfnydyiigidvapmkrsegyiggsavmfdsqgyirkivpikigeqrgesvdm
neffkemvdkfkefnikldnkkilllrdgritnneeeglkyisemfdievvtmdviknhp
vrafanmkmyfnlggaiyliphklkqakgtpipiklakkriikngkvekqsitrqdvldi
filtrlnygsisadmrlpapvhyahkfanairnewkikeeflaegflyfv

SCOPe Domain Coordinates for d1u04a2:

Click to download the PDB-style file with coordinates for d1u04a2.
(The format of our PDB-style files is described here.)

Timeline for d1u04a2:

996511
d1u04a2 in context of chain
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Domains from same chain:
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d1u04a1