Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds) |
Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily) Multidomain subunits of complex domain organization |
Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families) The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit |
Family e.29.1.2: RNA-polymerase beta-prime [64490] (4 proteins) |
Protein RNA-polymerase beta-prime [64493] (2 species) |
Species Thermus thermophilus [TaxId:274] [75610] (15 PDB entries) Uniprot Q8RQE8; part of multichain biological unit |
Domain d1smyd_: 1smy D: [105779] Other proteins in same PDB: d1smya1, d1smya2, d1smyb1, d1smyb2, d1smyc_, d1smye_, d1smyf1, d1smyf2, d1smyf3, d1smyk1, d1smyk2, d1smyl1, d1smyl2, d1smym_, d1smyo_, d1smyp1, d1smyp2, d1smyp3 complexed with g4p, mg, zn |
PDB Entry: 1smy (more details), 2.7 Å
SCOPe Domain Sequences for d1smyd_:
Sequence, based on SEQRES records: (download)
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} kkevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacg kykrqrfegkvcercgvevtksivrryrmghielatpaahiwfvkdvpskigtlldlsat eleqvlyfskyivldpkgailngvpvekrqlltdeeyrelrygkqetyplppgvdalvkd geevvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekeaykpgei laelpepylfraeeegvvelkeleegaflvlrredepvatyflpvgmtplvvhgeivekg qplaeakgllrmprqvraaqveaeeegetvyltlflewtepkdyrvqphmnvvvpegarv eagdkivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevstgdrvapgdvl adggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldlealekelleem khpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdggrfatsdln dlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdalldngrrgapvtnpgsdrplr sltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkm eekgiapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlv egqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakp srdiilglyyitqvrkekkgaglefatpeealaahergevalnapikvagretsvgrlky vfanpdeallavahgivdlqdvvtvrymgkrletspgrilfarivaeavedekvaweliq ldvpqeknslkdlvyqaflrlgmektarlldalkyygftfsttsgitigiddavipeekk qyleeadrkllqieqayemgfltdrerydqilqlwtettekvtqavfknfeenypfnply vmaqsgargnpqqirqlcglrglmqkpsgetfevpvrssfregltvleyfisshgarkgg adtalrtadsgyltrklvdvtheivvreadcgttnyisvplfqpdevtrslrlrkradie aglygrvlarevevlgvrleegrylsmddvhllikaaeageiqevpvrspltcqtrygvc qkcygydlsmarpvsigeavgivaaqsigepgtqltmrtfhtggvagaaditqglprvie lfearrpkakaviseidgvvrieeteeklsvfvesegfskeyklpkearllvkdgdyvea gqpltrgaidphqlleakgpeaverylveeiqkvyraqgvklhdkhieivvrqmmkyvev tdpgdsrllegqvlekwdvealnerliaegktpvawkpllmgvtksalstkswlsaasfq ntthvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqktlkaieearke avea
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} kkevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacg kykrqrfegkvcercgvevtksivrryrmghielatpaahiwfvkdvpskigtlldlsat eleqvlyfskyivldpkgailngvpvekrqlltdeeyrelrygkqetyplppgvdalvkd geevvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekeaykpgei laelpepylfgdkivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevstgd rvapgdvladggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldleal ekelleemkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdgg rfatsdlndlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdalldngrrgapvtn pgsdrplrsltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelf kpfllkkmeekgiapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgi qafqpvlvegqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspa sgeplakpsrdiilglyyitqvrkekkgaglefatpeealaahergevalnapikvagre tsvgrlkyvfanpdeallavahgivdlqdvvtvrymgkrletspgrilfarivaeavede kvaweliqldvpqeknslkdlvyqaflrlgmektarlldalkyygftfsttsgitigidd avipeekkqyleeadrkllqieqayemgfltdrerydqilqlwtettekvtqavfknfee nypfnplyvmaqsgargnpqqirqlcglrglmqkpsgetfevpvrssfregltvleyfis shgarkggadtalrtadsgyltrklvdvtheivvreadcgttnyisvplfqpdevtrslr lrkradieaglygrvlarevevlgvrleegrylsmddvhllikaaeageiqevpvrsplt cqtrygvcqkcygydlsmarpvsigeavgivaaqsigepgtqltmrtfhtggvagaadit qglprvielfearrpkakaviseidgvvrieeteeklsvfvesegfskeyklpkearllv kdgdyveagqpltrgaidphqlleakgpeaverylveeiqkvyraqgvklhdkhieivvr qmmkyvevtdpgdsrllegqvlekwdvealnerliaegktpvawkpllmgvtksalstks wlsaasfqntthvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqktlk aieearkeavea
Timeline for d1smyd_: