Lineage for d1p0ya2 (1p0y A:49-310)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2083143Fold b.85: beta-clip [51268] (7 superfamilies)
    double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
  4. 2083796Superfamily b.85.7: SET domain [82199] (4 families) (S)
    duplication: the core is composed of two structural repeats similar to (circularly permuted) repeats of AFPIII
    also contains a substrate-binding alpha+beta subdomain inserted in the core
  5. 2083850Family b.85.7.3: RuBisCo LSMT catalytic domain [82210] (1 protein)
  6. 2083851Protein RuBisCo LSMT catalytic domain [82211] (1 species)
  7. 2083852Species Pea (Pisum sativum) [TaxId:3888] [82212] (7 PDB entries)
  8. 2083856Domain d1p0ya2: 1p0y A:49-310 [87655]
    Other proteins in same PDB: d1p0ya1, d1p0ya3, d1p0yb1, d1p0yb3, d1p0yc1, d1p0yc3
    complexed with mlz, sah

Details for d1p0ya2

PDB Entry: 1p0y (more details), 2.55 Å

PDB Description: crystal structure of the set domain of lsmt bound to melysine and adohcy
PDB Compounds: (A:) Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast

SCOPe Domain Sequences for d1p0ya2:

Sequence, based on SEQRES records: (download)

>d1p0ya2 b.85.7.3 (A:49-310) RuBisCo LSMT catalytic domain {Pea (Pisum sativum) [TaxId: 3888]}
slspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlwinpd
avaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseeelqel
qgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsrafsrlr
nenlvvvpmadlinhsagvttedhayevkgaaglfswdylfslksplsvkageqvyiqyd
lnksnaelaldygfiepnenrh

Sequence, based on observed residues (ATOM records): (download)

>d1p0ya2 b.85.7.3 (A:49-310) RuBisCo LSMT catalytic domain {Pea (Pisum sativum) [TaxId: 3888]}
slspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlwinpd
avaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseeelqel
qgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsrafsrlr
nenlvvvpmadlinhsagvttedhayevkdylfslksplsvkageqvyiqydlnksnael
aldygfiepnenrh

SCOPe Domain Coordinates for d1p0ya2:

Click to download the PDB-style file with coordinates for d1p0ya2.
(The format of our PDB-style files is described here.)

Timeline for d1p0ya2: