Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.116: alpha/beta knot [75216] (1 superfamily) core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot |
Superfamily c.116.1: alpha/beta knot [75217] (9 families) known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily all known members have dimeric structures |
Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins) fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain |
Protein tRNA(m1G37)-methyltransferase TrmD [89630] (3 species) |
Species Aquifex aeolicus [TaxId:63363] [102278] (1 PDB entry) |
Domain d1oy5a_: 1oy5 A: [93718] a TrmD topoisomer that lacks the knot; misfolded inactive structure? |
PDB Entry: 1oy5 (more details), 2.6 Å
SCOPe Domain Sequences for d1oy5a_:
Sequence, based on SEQRES records: (download)
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} nplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpygglpgm vlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegvder vkkivdmeislgdfilsggeivalavidavsrvlpgvlsepqsiqedsfqnrwlgypvyt rpreyrgmkvpeellsghhklielwklwhrientvkkrpdlipkdltelekd
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} nplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpygglpgm vlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegvder vkkivdmeislgdfilsggeivalavidavsrvlpgvlsepypvytrpreyrgmkvpeel lsghhklielwklwhrientvkkrpdlipkdltelekd
Timeline for d1oy5a_: