Lineage for d1otda_ (1otd A:)

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. Family d.110.3.1: PYP-like [55786] (3 proteins)
  6. Protein Photoactive yellow protein, PYP [55787] (1 species)
  7. Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (82 PDB entries)
    Uniprot P16113
  8. Domain d1otda_: 1otd A: [93513]
    complexed with hc4

Details for d1otda_

PDB Entry: 1otd (more details), 1.25 Å

PDB Description: strong hydrogen bonds in photoactive yellow protein and their role in its photocycle
PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1otda_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1otda_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
sqldnlafgaiqldgdgtilqynaaegditgrnpkevigknffkdvapctdspefsgkfk
egvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywvfvkrv

SCOPe Domain Coordinates for d1otda_ are not available.

Timeline for d1otda_:

Domains from other chains:
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d1otdb_