Lineage for d1c6vb_ (1c6v B:)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2493948Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
  6. 2493949Protein Retroviral integrase, catalytic domain [53108] (4 species)
  7. 2494101Species Simian immunodeficiency virus [TaxId:11723] [53111] (3 PDB entries)
  8. 2494107Domain d1c6vb_: 1c6v B: [33673]
    Other proteins in same PDB: d1c6vx_
    mutant

Details for d1c6vb_

PDB Entry: 1c6v (more details), 3 Å

PDB Description: siv integrase (catalytic domain + dna biding domain comprising residues 50-293) mutant with phe 185 replaced by his (f185h)
PDB Compounds: (B:) protein (siv integrase)

SCOPe Domain Sequences for d1c6vb_:

Sequence, based on SEQRES records: (download)

>d1c6vb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
nsdlgtwqmdcthlegkivivavhvasgfieaevipqetgrqtalfllklagrwpithlh
tdnganfasqevkmvawwagiehtfgvpynpqsqgvveamnhhlknqidrireqansvet
ivlmavhcmnhkrrggigdmtpaerlinmitte

Sequence, based on observed residues (ATOM records): (download)

>d1c6vb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
nsdlgtwqmdcthlegkivivavhvasgfieaevipqetgrqtalfllklagrwpithlh
tdnganfasqevkmvawwagiehtfgeamnhhlknqidrireqansvetivlmavhcmnh
krrggigdmtpaerlinmitte

SCOPe Domain Coordinates for d1c6vb_:

Click to download the PDB-style file with coordinates for d1c6vb_.
(The format of our PDB-style files is described here.)

Timeline for d1c6vb_: