SCOPe: Structural Classification of Proteins — extended. Release 2.03 (October 2013)
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References

We recommend that users cite:
[1] Fox NK, Brenner SE, Chandonia JM. 2013. SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures. Nucl. Acids Res. doi: 10.1093/nar/gkt1240. [PDF]

Users of SCOP releases should cite:
[2] Murzin AG, Brenner SE, Hubbard TJP, Chothia C. 1995. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540. [PDF]


More recent changes to SCOP are described in:
[3] Lo Conte L, Brenner SE, Hubbard TJP, Chothia C, Murzin AG. 2002. SCOP database in 2002: refinements accommodate structural genomics. Nucl. Acid Res. 30(1), 264-267. [PDF],

[4] Andreeva A, Howorth D, Brenner SE, Hubbard TJP, Chothia C, Murzin AG. 2004. SCOP database in 2004: refinements integrate structure and sequence family data. Nucl. Acid Res. 32:D226-D229. [PDF], and

[5] Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJP, Chothia C, Murzin AG. 2008. Data growth and its impact on the SCOP database: new developments. Nucl. Acid Res. 36:D419-425. [PDF].

Additional documentation about the ASTRAL sequences and subsets is in:
[6] Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. 2004. The ASTRAL compendium in 2004. Nucleic Acids Research 32:D189-D192. [PDF],

[7] Chandonia JM, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. 2002. ASTRAL compendium enhancements. Nucleic Acids Research 30:260-263. [PDF], and

[8] Brenner SE, Koehl P, Levitt M. 2000. The ASTRAL compendium for sequence and structure analysis. Nucleic Acids Research 28:254-256. [PDF]

A description of the trends in SCOP classification of newly solved protein structures is in:
[9] Chandonia JM, Brenner SE. 2006. The impact of structural genomics: expectations and outcomes. Science 311:347-51. [PDF]|[Supplementary Info].


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