PDB entry 7p0t

View 7p0t on RCSB PDB site
Description: CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH LCMV-DERIVED GP33 PEPTIDE with D-AMINOACID
Class: immune system
Keywords: D-aminoacid, class I major histocompatibility complex, b2-microglobulin, IMMUNE SYSTEM
Deposited on 2021-06-30, released 2022-03-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2022-04-13, with a file datestamp of 2022-04-08.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7p0ta1, d7p0ta2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (2-100)
      • initiating methionine (0)
      • expression tag (1)
      • conflict (86)
    Domains in SCOPe 2.08: d7p0tb_
  • Chain 'C':
    Compound: Derived peptide gp33-41 from LCMV
    Species: Lymphocytic choriomeningitis mammarenavirus [TaxId:11623]
    Database cross-references and differences (RAF-indexed):
    • PDB 7P0T (0-8)
  • Chain 'D':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7p0td1, d7p0td2
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (2-100)
      • initiating methionine (0)
      • expression tag (1)
      • conflict (86)
    Domains in SCOPe 2.08: d7p0te_
  • Chain 'F':
    Compound: Derived peptide gp33-41 from LCMV
    Species: Lymphocytic choriomeningitis mammarenavirus [TaxId:11623]
    Database cross-references and differences (RAF-indexed):
    • PDB 7P0T (0-8)
  • Heterogens: SO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7p0tA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwep

    Sequence, based on observed residues (ATOM records): (download) 
    >7p0tA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkntllrtd
spkahvthhprtlrcwalgfypaditltwqlvetrpagdgtfqkwasvqnytcrvyhegl
pepltlr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7p0tB (B:)
mgiqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfsk
dwsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >7p0tB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7p0tD (D:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwep

    Sequence, based on observed residues (ATOM records): (download) 
    >7p0tD (D:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylknrtdspk
ahvthhprskgevtlrcwalgfypaditltwqqdmelvetrpagdgtfqkwasvvvplqn
ytcrvyheglpepltlrw

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7p0tE (E:)
mgiqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfsk
dwsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >7p0tE (E:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'F':
    No sequence available.