PDB entry 7on1

View 7on1 on RCSB PDB site
Description: cenp-a nucleosome in complex with cenp-c
Deposited on 2021-05-25, released 2021-07-07
The last revision was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: EM
Resolution: 3.35 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: BJ4_G0006610.mRNA.1.CDS.1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS3513, PACBIOSEQ_LOCUS3568, PACBIOSEQ_LOCUS3643, PACBIOSEQ_LOCUS3923, SCNYR20_0010011700, SCP684_0010011600
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: BJ4_G0006610.mRNA.1.CDS.1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS3513, PACBIOSEQ_LOCUS3568, PACBIOSEQ_LOCUS3643, PACBIOSEQ_LOCUS3923, SCNYR20_0010011700, SCP684_0010011600
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (152-mer)
    Species: Escherichia coli [TaxId:562]
  • Chain 'J':
    Compound: DNA (123-mer)
    Species: Escherichia coli [TaxId:562]
  • Chain 'a':
    Compound: BJ4_G0007000.mRNA.1.CDS.1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS3556, PACBIOSEQ_LOCUS3600, PACBIOSEQ_LOCUS3611, PACBIOSEQ_LOCUS3648, SCP684_0010015800
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: histone h4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS211, PACBIOSEQ_LOCUS221, PACBIOSEQ_LOCUS224, PACBIOSEQ_LOCUS227, PACBIOSEQ_LOCUS231, PACBIOSEQ_LOCUS238, PACBIOSEQ_LOCUS256, PACBIOSEQ_LOCUS257, PACBIOSEQ_LOCUS4758, PACBIOSEQ_LOCUS5031, PACBIOSEQ_LOCUS5100, PACBIOSEQ_LOCUS5103, PACBIOSEQ_LOCUS5119, PACBIOSEQ_LOCUS5144, PACBIOSEQ_LOCUS5156, PACBIOSEQ_LOCUS5208, PACBIOSEQ_LOCUS5512, PACBIOSEQ_LOCUS5605, SCNYR20_0007010300, SCNYR20_0008026600, SCP684_0007010000, SCP684_0008026100
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: histone h2a
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS1081, PACBIOSEQ_LOCUS1151, PACBIOSEQ_LOCUS1154, PACBIOSEQ_LOCUS1156, PACBIOSEQ_LOCUS1162, PACBIOSEQ_LOCUS1172, PACBIOSEQ_LOCUS1175, PACBIOSEQ_LOCUS1287, SCNYR20_0001041300, SCP684_0001040900
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: histone h2b
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS1150, PACBIOSEQ_LOCUS1153, PACBIOSEQ_LOCUS1155, PACBIOSEQ_LOCUS1161, PACBIOSEQ_LOCUS1171, PACBIOSEQ_LOCUS1174, PACBIOSEQ_LOCUS1245, PACBIOSEQ_LOCUS1286, SCNYR20_0001041200, SCP684_0001040800
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: BJ4_G0007000.mRNA.1.CDS.1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS3556, PACBIOSEQ_LOCUS3600, PACBIOSEQ_LOCUS3611, PACBIOSEQ_LOCUS3648, SCP684_0010015800
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: histone h4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS211, PACBIOSEQ_LOCUS221, PACBIOSEQ_LOCUS224, PACBIOSEQ_LOCUS227, PACBIOSEQ_LOCUS231, PACBIOSEQ_LOCUS238, PACBIOSEQ_LOCUS256, PACBIOSEQ_LOCUS257, PACBIOSEQ_LOCUS4758, PACBIOSEQ_LOCUS5031, PACBIOSEQ_LOCUS5100, PACBIOSEQ_LOCUS5103, PACBIOSEQ_LOCUS5119, PACBIOSEQ_LOCUS5144, PACBIOSEQ_LOCUS5156, PACBIOSEQ_LOCUS5208, PACBIOSEQ_LOCUS5512, PACBIOSEQ_LOCUS5605, SCNYR20_0007010300, SCNYR20_0008026600, SCP684_0007010000, SCP684_0008026100
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: histone h2a
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS1081, PACBIOSEQ_LOCUS1151, PACBIOSEQ_LOCUS1154, PACBIOSEQ_LOCUS1156, PACBIOSEQ_LOCUS1162, PACBIOSEQ_LOCUS1172, PACBIOSEQ_LOCUS1175, PACBIOSEQ_LOCUS1287, SCNYR20_0001041300, SCP684_0001040900
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: histone h2b
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS1150, PACBIOSEQ_LOCUS1153, PACBIOSEQ_LOCUS1155, PACBIOSEQ_LOCUS1161, PACBIOSEQ_LOCUS1171, PACBIOSEQ_LOCUS1174, PACBIOSEQ_LOCUS1245, PACBIOSEQ_LOCUS1286, SCNYR20_0001041200, SCP684_0001040800
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7on1C (C:)
mdymklglksrktgidvkqdipkdeysmeniddffkddetslismrrksrrksslflpst
lngdtknvlppflqsyksqddevvqspsgkgdgsrrssllshqsnflspandfepieeep
eqeendirgndfatpitqklskptykrkystrysldtsespsvrltpdritnknvysdvp
dlvadeddddrvntslntsdnalledeleddgfipeseedgdyiesdssldsgsdsasds
dgdntyqeveeeaevntndneddyirrqasdvvrtdsiidrnglrkstrvkvaplqywrn
ekivykrksnkpvldidkivtydesedeeeilaaqrrkkqkkkptptrpynyvptgrprg
rpkkdpnakenlipedpnediieriesggiengewlkhgileanvkisdtkeetkdeiia
fapnlsqteqvkdtkdenfaleimfdkhkeyfasgilklpaisgqkklsnsfrtyitfhv
iqgivevtvcknkflsvkgstfqipafneyaianrgndeakmffvqvtvsedanddndke
ldstfdtfg

    Sequence, based on observed residues (ATOM records):
    >7on1C (C:)
lrkstrvkvaplqywrnekiv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7on1D (D:)
mdymklglksrktgidvkqdipkdeysmeniddffkddetslismrrksrrksslflpst
lngdtknvlppflqsyksqddevvqspsgkgdgsrrssllshqsnflspandfepieeep
eqeendirgndfatpitqklskptykrkystrysldtsespsvrltpdritnknvysdvp
dlvadeddddrvntslntsdnalledeleddgfipeseedgdyiesdssldsgsdsasds
dgdntyqeveeeaevntndneddyirrqasdvvrtdsiidrnglrkstrvkvaplqywrn
ekivykrksnkpvldidkivtydesedeeeilaaqrrkkqkkkptptrpynyvptgrprg
rpkkdpnakenlipedpnediieriesggiengewlkhgileanvkisdtkeetkdeiia
fapnlsqteqvkdtkdenfaleimfdkhkeyfasgilklpaisgqkklsnsfrtyitfhv
iqgivevtvcknkflsvkgstfqipafneyaianrgndeakmffvqvtvsedanddndke
ldstfdtfg

    Sequence, based on observed residues (ATOM records):
    >7on1D (D:)
lrkstrvkvaplqywrnekiv

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'a':
    Sequence, based on SEQRES records:
    >7on1a (a:)
gamsskqqwvssaiqsdssgrslsnvnrlagdqqsindralsllqrtratknlfprreer
rryessksdldietdyedqagnleieteneeeaemetevpapvrthsyaldryvrqkrre
kqrkqslkrvekkytpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrw
qsmaimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi

    Sequence, based on observed residues (ATOM records):
    >7on1a (a:)
tpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrwqsmaimalqeasea
ylvgllehtnllalhakritimkkdmqlarrirgqfi

  • Chain 'b':
    Sequence, based on SEQRES records:
    >7on1b (b:)
gamsgrgkggkglgkggakrhrkilrdniqgitkpairrlarrggvkrisgliyeevrav
lksflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >7on1b (b:)
dniqgitkpairrlarrggvkrisgliyeevravlksflesvirdsvtytehakrktvts
ldvvyalkrqgrtlygfgg

  • Chain 'c':
    Sequence, based on SEQRES records:
    >7on1c (c:)
gamsggkggkagsaakasqsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavle
ylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnll
pkksakatkasqel

    Sequence, based on observed residues (ATOM records):
    >7on1c (c:)
qsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavleylaaeilelagnaardnk
ktriiprhlqlairnddelnkllgnvtiaqggvlpni

  • Chain 'd':
    Sequence, based on SEQRES records:
    >7on1d (d:)
gamsakaekkpaskapaekkpaakktststdgkkrskarketyssyiykvlkqthpdtgi
sqksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavseg
travtkyssstqa

    Sequence, based on observed residues (ATOM records):
    >7on1d (d:)
skarketyssyiykvlkqthpdtgisqksmsilnsfvndiferiateasklaaynkksti
sareiqtavrlilpgelakhavsegtravtkysss

  • Chain 'e':
    Sequence, based on SEQRES records:
    >7on1e (e:)
gamsskqqwvssaiqsdssgrslsnvnrlagdqqsindralsllqrtratknlfprreer
rryessksdldietdyedqagnleieteneeeaemetevpapvrthsyaldryvrqkrre
kqrkqslkrvekkytpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrw
qsmaimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi

    Sequence, based on observed residues (ATOM records):
    >7on1e (e:)
tpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrwqsmaimalqeasea
ylvgllehtnllalhakritimkkdmqlarrirgqfi

  • Chain 'f':
    Sequence, based on SEQRES records:
    >7on1f (f:)
gamsgrgkggkglgkggakrhrkilrdniqgitkpairrlarrggvkrisgliyeevrav
lksflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >7on1f (f:)
dniqgitkpairrlarrggvkrisgliyeevravlksflesvirdsvtytehakrktvts
ldvvyalkrqgrtlygfgg

  • Chain 'g':
    Sequence, based on SEQRES records:
    >7on1g (g:)
gamsggkggkagsaakasqsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavle
ylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnll
pkksakatkasqel

    Sequence, based on observed residues (ATOM records):
    >7on1g (g:)
qsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavleylaaeilelagnaardnk
ktriiprhlqlairnddelnkllgnvtiaqggvlpni

  • Chain 'h':
    Sequence, based on SEQRES records:
    >7on1h (h:)
gamsakaekkpaskapaekkpaakktststdgkkrskarketyssyiykvlkqthpdtgi
sqksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavseg
travtkyssstqa

    Sequence, based on observed residues (ATOM records):
    >7on1h (h:)
karketyssyiykvlkqthpdtgisqksmsilnsfvndiferiateasklaaynkkstis
areiqtavrlilpgelakhavsegtravtkysss