PDB entry 7om6

View 7om6 on RCSB PDB site
Description: thosea asigna virus rdrp domain in complex with rna
Deposited on 2021-05-21, released 2021-07-28
The last revision was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: XRAY
Resolution: 2.18 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-dependent RNA polymerase
    Species: Thosea asigna virus [TaxId:83810]
    Gene: RdRp
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6A562 (23-683)
      • initiating methionine (0)
      • expression tag (1-22)
  • Chain 'B':
    Compound: RNA-dependent RNA polymerase
    Species: Thosea asigna virus [TaxId:83810]
    Gene: RdRp
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6A562 (23-683)
      • initiating methionine (0)
      • expression tag (1-22)
  • Chain 'C':
    Compound: RNA (5'-r(p*ap*ap*ap*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: RNA (5'-r(p*ap*ap*ap*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: RNA (5'-r(p*ap*ap*ap*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: RNA (5'-r(p*ap*ap*ap*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7om6A (A:)
mgsshhhhhhsqdlenlyfqggstrlsleamlaeramvarqdlaglkrklagadrvlapq
speqcgresaqaqarsvtselksavkeaqglehqtldfleqlgeypvcgilhgdhpvhps
gthnnngkvsvkrqfaagvntsdaltcafrfedsdlvretalkttytdgtwagfvqrlkm
qttrkcvqekvsrkllkqlfpydpqklvdvsgelselvlgiktnaiasagppywrtkrda
lpdmldcvlpllydhivrkdlttlrnkhpelflaecknktdryeveslgektrpyfshpf
hlsalvsvlsqsfsgalkimtedstsfnaygfswtnggaedlaiwarqageagkkppria
cygddtdiyyrkdgklyricpdfkqmdgsvdattieavvdyvvdahvkqyptarqfweev
gklwvematqspflidgtkvyrkmqkdglmtgvvgttlfdtvksalayndwadqlmfgsl
nlleekyaieffknkhglvikegtwkpalvnedpgfgelwteqkflglqlkvvrrenekv
yvpnlpfedwltmwvtprskyrsketetmrertlfdrargllvtgavfderarglmgavi
nstapevvcmrvqegggrgappayafltrdgvfefpisdgypsydwvvslysrdhpcdmp
rvfpeaatliasyrkqvmdtrvvi

    Sequence, based on observed residues (ATOM records):
    >7om6A (A:)
trlsleamlaeramvarqdlaglkrklagadrvlapqspeqcgresaqaqarsvtselks
avkeaqglehqtldfleqlgeypvcgilhgdhpvhpsgthnnngkvsvkrqfaagvsdal
tcafrfedsdlvretalkttytdgtwagfvqrlkmqttrkcvqekvsrkllkqlfpydpq
klvdvsgelselvlgiktnaiasagppywrtkrdalpdmldcvlpllydhivrkdlttlr
nkhpelflaecknktdryeveslgektrpyfshpfhlsalvsvlsqsfsgalkimtedst
sfnaygfswtnggaedlaiwarqageagkkppriacygddtdiyyrkdgklyricpdfkq
mdgsvdattieavvdyvvdahvkqyptarqfweevgklwvematqspflidgtkvyrkmq
kdglmtgvvgttlfdtvksalayndwadqlmfgslnlleekyaieffknkhglvikegtw
kpalvnedpgfgelwteqkflglqlkvvrrenekvyvpnlpfedwltmwvtprstetmre
rtlfdrargllvtgavfderarglmgavinstapevvcmrvqeisdgypsydwvvslysr
dhpcdmprvfpeaatliasyrkqvmdtrvv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7om6B (B:)
mgsshhhhhhsqdlenlyfqggstrlsleamlaeramvarqdlaglkrklagadrvlapq
speqcgresaqaqarsvtselksavkeaqglehqtldfleqlgeypvcgilhgdhpvhps
gthnnngkvsvkrqfaagvntsdaltcafrfedsdlvretalkttytdgtwagfvqrlkm
qttrkcvqekvsrkllkqlfpydpqklvdvsgelselvlgiktnaiasagppywrtkrda
lpdmldcvlpllydhivrkdlttlrnkhpelflaecknktdryeveslgektrpyfshpf
hlsalvsvlsqsfsgalkimtedstsfnaygfswtnggaedlaiwarqageagkkppria
cygddtdiyyrkdgklyricpdfkqmdgsvdattieavvdyvvdahvkqyptarqfweev
gklwvematqspflidgtkvyrkmqkdglmtgvvgttlfdtvksalayndwadqlmfgsl
nlleekyaieffknkhglvikegtwkpalvnedpgfgelwteqkflglqlkvvrrenekv
yvpnlpfedwltmwvtprskyrsketetmrertlfdrargllvtgavfderarglmgavi
nstapevvcmrvqegggrgappayafltrdgvfefpisdgypsydwvvslysrdhpcdmp
rvfpeaatliasyrkqvmdtrvvi

    Sequence, based on observed residues (ATOM records):
    >7om6B (B:)
trlsleamlaeramvarqdlaglkrklagadrvlapqspeqcgresaqaqarsvtselks
avkeaqglehqtldfleqlgeypvcgilhgdhpvhpsgthnnngkvsvkrqfaagvsdal
tcafrfedsdlvretalkttytdgtwagfvqrlkmqttrkcvqekvsrkllkqlfpydpq
klvdvsgelselvlgiktnaiasagppywrtkrdalpdmldcvlpllydhivrkdlttlr
nkhpelflaecknktdryeveslgektrpyfshpfhlsalvsvlsqsfsgalkimtedst
sfnaygfswtnggaedlaiwarqageagkkppriacygddtdiyyrkdgklyricpdfkq
mdgsvdattieavvdyvvdahvkqyptarqfweevgklwvematqspflidgtkvyrkmq
kdglmtgvvgttlfdtvksalayndwadqlmfgslnlleekyaieffknkhglvikegtw
kpalvnedpgfgelwteqkflglqlkvvrrenekvyvpnlpfedwltmwvtprsketetm
rertlfdrargllvtgavfderarglmgavinstapevvcmrvqegisdgypsydwvvsl
ysrdhpcdmprvfpeaatliasyrkqvmdtrvvi

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.