PDB entry 7ogr

View 7ogr on RCSB PDB site
Description: structure of the apo-state of the bacteriophage phikz non-virion rna polymerase
Deposited on 2021-05-07, released 2021-07-07
The last revision was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PHIKZ055,Non-virion DNA-dependent RNA polymerase subunit beta
    Species: Pseudomonas phage fnug [TaxId:2719836]
    Gene: fnug_70
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8SDA7 (20-434)
      • initiating methionine (0)
      • expression tag (1-19)
      • linker (435-440)
    • Uniprot A0A6H2A8Q1 (441-507)
  • Chain 'B':
    Compound: phikz068
    Species: Pseudomonas phage phiKZ [TaxId:169683]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8SD94 (0-520)
      • conflict (1)
      • conflict (77)
  • Chain 'C':
    Compound: PHIKZ071,DNA-directed RNA polymerase
    Species: Pseudomonas phage PA7 [TaxId:347330]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8SD91 (0-392)
      • linker (393-399)
    • Uniprot I7DB36 (400-699)
  • Chain 'D':
    Compound: phikz074
    Species: Pseudomonas phage phiKZ [TaxId:169683]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: phikz123
    Species: Pseudomonas phage phiKZ [TaxId:169683]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8SD39 (0-542)
      • conflict (196)
  • Chain 'X':
    Compound: UNK helices
    Species: Pseudomonas virus phiKZ [TaxId:169683]
    Database cross-references and differences (RAF-indexed):
    • PDB 7OGR (0-31)
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7ogrA (A:)
    mgsshhhhhhssglvprgshmglyakvvdhnevhdqftgkriyandyntsnsdekeefdr
    hfyshfqdseaiessvscdcraiedahklgvicdicntpvvntssrpiepsmwvrtpkhv
    rslinprliimltgylvtkefdflayltdtsyrydvesigsketrrkvdrllhrgfergl
    nhfidnfneifqflldaniisnnksefaqfvaqnkdklfpkylpvpsklcfvaesttsgt
    yldkpieaaidatltfasidassvplspikaqnrtmrglrlygqfyeiyaksriaqkpgl
    arrhmfgarlnataravitsisdphdydelhipwgvgcqllkyhltnklkakfnmttrea
    fsfvyenvlqynqiiadlfkeliaeaapykgmgctfhrnptlqrgstqqffitkvkddin
    dnsismsvlclkapnadfdgdqlnltlmpdvyltkateriaphtwvlsidepheisgnle
    lqgpvvetiinwahekylppleewlkak
    

    Sequence, based on observed residues (ATOM records):
    >7ogrA (A:)
    taravitsisdphdydelhipwgvgcqllkyhltnklkakfnmttreafsfvyenvlqyn
    qiiadlfkeliaeaapykgmgctfhrnprgstqqffitkvkddindnsismsvlclkapn
    adfdgdqlnltlmpdvyltkateriaphtwvlsidepheisgnlelqgpvvetiinwahe
    kylppleewl
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7ogrB (B:)
    meiivtgvqgtgftevatehngkrltwtttayskirvqdqqrvfqeindywsglsaeaqq
    hiwncyveirkimdmamhpmriamslsyyikemykampmnsfrrwlltigklyipvdiee
    vitddsrynrpdqtylkhdyinlasvslalrplvpiwgefidqgtsqemhkecevislis
    dcevnhwpvdeisidgtpvetaydklsayvkfcvedeaptlanlyrgmssaevpdilqak
    vmvrrltilplndatshsivsnmfryvksnlnpaerstadrvndkrpdkggiddddktsf
    ieshktkqrvtpgdivaynldaldvvklvhkiddtvpveliqecldcvavtatkdiyphq
    illaqwvmhkafparafshinknavnhllaaaqslmwhwgfqqvavfmqvelyysgeham
    siqprnstriqikykdvmdelyphqrqqraingvpvapvniagiavqsahasirssnwiy
    hgpdrlfkeaeqvtqnkvlvvpatiksvitelvihlgklnq
    

    Sequence, based on observed residues (ATOM records):
    >7ogrB (B:)
    kqrvtpgdivaynldaldvvklvhkiddtvpveliqecldcvavtatkdiyphqillaqw
    vmhkafparafshinknavnhllaaaqslmwhwgfqqvavfmqvelyikykdvmdelyph
    qrqqraingvpvapvniagiavqsahasirssnwiyhgpdrlfkeaeqvtqnkvlvvpat
    iksvitelvihlgklnq
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7ogrC (C:)
    msqlgrreidltllghtgldpwygttssargamfvthigqapevngnesryfltgaeley
    akythdvrfpedcrvlhvlrkyptgigkdsirsnpvttiiyenyfdkyktigvlhvpeym
    shhqdfgyelvknrevwetiapnemfskdtviaqsgavkkdgtlgmgvnanvvflsaagt
    iedgfvanknflkrmmptsystavanagrkafflnmygddkiykpfpdigdvirpdgvif
    airdhdddlapaemtpralrtldrtfdravigtpgakvididiwrdervnpsptptgmda
    qlvkyhthlssyyrellkiyrgllarrkddlhiteeferlivtaqmflpqpdnvrklsrf
    yrldpldewrvevtykaqkmpagafkmtdfhggkgvickvmededmpidengnradliif
    ggstmrrsnygriyehgfgaaardlaqrlrveagldrhakptqqqlnsvmgntqwvdyaf
    kellgfyeiiaptmhskmmehpnpaehvktvlmdgfpyiyapvddpvdlmaavnklinsd
    kyrphygkvsyrdqagkwvttkdnvlmgplymmllekigedwsaaasvktqpfglpskln
    nadrastpgretairsfgesetrsynctvgpgptaeildqtnnplahaavieswltaekp
    ssvpvavdrekipfggsrpvamfdhllecsgialeyapdh
    

    Sequence, based on observed residues (ATOM records):
    >7ogrC (C:)
    sqlgrreidltllghtgldpwygttssargamfvthigqapevngnesryfltgaeleya
    kythdvrfpedcrvlhvlrkyptgigkdsirsnpvttiiyenyfdkyktigvlhvpeyms
    hhqdfgyelvknrevwetiapnemfskdtviaqsgavkkdgtlgmgvnanvvflsaagti
    edgfvanknflkrmmptsystavanagrkafflnmygddkiykpfpdigdvirpdgvifa
    irdhdddlapaemtpralrtldrtfdravigtpgakvididiwrdervnpsptptgmdaq
    lvkyhthlssyyrellkiyrgllarrkddlhiteeferlivtaqmflpqpdnvrklsrfy
    rldpldewrvevtykaqkmpagafkmtdfhggkgvickvmededmpidengnradliifg
    gstmrrsnygriyehgfgaaardlaqrlrveagldrhakptqqqlnsvmgntqwvdyafk
    ellgfyeiiaptmhskmmehpnpaehvktvlmdgfpyiyapvddpvdlmaavnklinsdk
    yrphygkvsyrdqagkwvttkdnvlmgplymmllekiptaeildqtnnplahaavieswl
    taekpssvpvav
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7ogrD (D:)
    mnlnrykardllnlsyddlwslpsewhliefddgktvvsvdritklsvlcwyplkhykdc
    pipsdhhidfnriltdnpkdylnveggrvtskamvkhlnkaiwniydwsgetvdpevlsk
    laiegknwlynqttvklseylatlsmfdiaevynhpkvreanhniepttygiekisygkv
    kevfndptqfignsiieglrsgtqkteqllqafawrgfptdinsdifkypvttgyidgiw
    nlyenmiesrsgtkallynkellrvteyfnrksqliaqyvqrlhpgdckttilaeypvtk
    ltlkafkgkyyqkedgkldwirgnethligtkqkfrsvfgcnhpdsqgicmtcygrlgin
    ipkgtnigqvaavsmgdkitsavlstkhtdassaveqyklgkiesnylrtgeipetlylk
    keltqkdyrlviarseaenladilmiddltaypatsateltslalvyddevngecgdvlt
    vslynrraslsiemlkhikmvrweldqrdnivislrgfdfnlpfltlpnkhvnmyevmkr
    fqsflhsgsdsaeagklstekvgytsktylknykspiealpvfatmanekislnishcei
    liyammirsaqyrdyrlpkpgingqfekynrlmqcrslggamafekqheplnnpgsflnk
    mrndhpydllvkggklr
    

    Sequence, based on observed residues (ATOM records):
    >7ogrD (D:)
    mnlnrykardllnlsyddlwslpsewhliefddgktvvsvdritklsvlcwyplkhykdc
    pipsdhhidfnriltdnpkdylnveggrvtskamvkhlnkaiwniydwsgetvdpevlsk
    laiegknwlynqttvklseylatlsmfdiaevynhpkvreanhniepttygiekisygkv
    kevfndptqfignsiieglrsgtqkteqllqafawrgfptdinsdifkypvttgyidgiw
    nlyenmiesrsgtkallynkellrvteyfnrksqliaqyvqrlhpgdckttilaeypvtk
    ltlkafkgkyyqkedwirgnethligtkqkfrsvfgcnicmtcygrlginipkgtnigqv
    aavsmgdkitsav
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7ogrE (E:)
    mpdpfliekirentpcmnptlangitvehtmtrdpntgvnmtrryidslfdissvlfpdg
    fkyegnractplkhfeeitreynakrianiaptdmymidlmfsykgemlyprpmllpafk
    rgnmvtingakyigspvltdvgfsvlndsifipfrrtkltfkqtdhhymcngqrkimyvi
    wsqihnemakrtkrdlgnrphiesclahyffcqfgvtqtfkqwanvdvkcgllsdfpeee
    yprekwniyssatlkgkhptgemvlviprhqesifatrliagfwyvvdafpmrftrpeyv
    dstnlwrvilghmvfgdfehqgkveenidshlhsfcnsldemtieelktvgvnvstiwel
    lyeimtslahhlyatdidetsmygkrltvlhylmsefnyavsmfgymfqsrrdrewtvqe
    lneglkrsfklqtaikrltvdhgeldtmsnpnssmlikgtsilvtqdraktakahnksli
    ndssriihasiaevgqyknqpknnpdgrgrlnmytkvgptglverreevreiidnaqlmf
    rak
    

    Sequence, based on observed residues (ATOM records):
    >7ogrE (E:)
    pdpfliekirentpcmnptlangitvehtmtrdpntgvnmtrryidslfdissvlfpdgf
    kyegnractplkhfeeitreynakrianiaptdmymidlmfsykgemlyprpmllpafkr
    gnmvtingakyigspvltdvgfsvlndsifipfrrtkltfgkveenidshlhsfcnslde
    mtieelktvgvnvstiwellyeimtslahhlyatdidetsmygkrltvlhylmsefnyav
    smfgymfqsrrdrewtvqelneglkrsfklqtaikrltvdhgeldtmsnpnssmlikgts
    ilvtqdraktssriihasiaevgqyknqpknnpdgrgrlnmytkvgptglverreevrei
    idnaqlmfrak
    

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >7ogrX (X:)
    aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa