PDB entry 7ogk

View 7ogk on RCSB PDB site
Description: a cooperative pnpase-hfq-rna carrier complex facilitates bacterial riboregulation. pnpase-3'ets(leuz)
Deposited on 2021-05-06, released 2021-07-07
The last revision was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polyribonucleotide nucleotidyltransferase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: pnp, b3164, JW5851
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Polyribonucleotide nucleotidyltransferase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: pnp, b3164, JW5851
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polyribonucleotide nucleotidyltransferase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: pnp, b3164, JW5851
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 3'ETS(LeuZ)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7ogkA (A:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaqllsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdisefaprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
dgekakhairrieeitaeievgrvytgkvtrivdfgafvaigggkeglvhisqiadkrve
kvtdylqmgqevpvkvlevdrqgrirlsikeateqsqpaaapeapaaeqge

    Sequence, based on observed residues (ATOM records):
    >7ogkA (A:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaqllsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdisefaprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
dgekakhairrieeitaeievgrvytgkvtrivdfgafvaigggkeglvhisqiadkrve
kvtdylqmgqevpvkvlevdrqgrirlsikeateq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7ogkB (B:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaqllsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdisefaprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
dgekakhairrieeitaeievgrvytgkvtrivdfgafvaigggkeglvhisqiadkrve
kvtdylqmgqevpvkvlevdrqgrirlsikeateqsqpaaapeapaaeqge

    Sequence, based on observed residues (ATOM records):
    >7ogkB (B:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaqllsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdisefaprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
dgekakhairrieeitaeievgrvytgkvtrivdfgafvaigggkeglvhisqiadkrve
kvtdylqmgqevpvkvlevdrqgrirlsikeateq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7ogkC (C:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaqllsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdisefaprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
dgekakhairrieeitaeievgrvytgkvtrivdfgafvaigggkeglvhisqiadkrve
kvtdylqmgqevpvkvlevdrqgrirlsikeateqsqpaaapeapaaeqge

    Sequence, based on observed residues (ATOM records):
    >7ogkC (C:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaqllsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdisefaprihtikinpdkikdvigkggsviralteetgttieieddgtvkiaat
dgekakhairrieeitaeievgrvytgkvtrivdfgafvaigggkeglvhisqiadkrve
kvtdylqmgqevpvkvlevdrqgrirlsikeateq

  • Chain 'D':
    No sequence available.