PDB entry 7ofy

View 7ofy on RCSB PDB site
Description: Crystal structure of SQ binding protein from Agrobacterium tumefaciens in complex with sulfoquinovosyl glycerol (SQGro)
Class: sugar binding protein
Keywords: sulfoquinovosyl diglyceride, SQDG, sulfoquinovose glycerol, SQGro, sulfoglycolysis, SUGAR BINDING PROTEIN
Deposited on 2021-05-05, released 2022-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2022-04-20, with a file datestamp of 2022-04-15.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sulfoquinovosyl binding protein
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: SY94_3278
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A083ZKV5 (1-387)
      • initiating methionine (0)
      • expression tag (388-395)
    Domains in SCOPe 2.08: d7ofya1, d7ofya2
  • Chain 'B':
    Compound: Sulfoquinovosyl binding protein
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: SY94_3278
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A083ZKV5 (1-387)
      • initiating methionine (0)
      • expression tag (388-395)
    Domains in SCOPe 2.08: d7ofyb1, d7ofyb2
  • Heterogens: VCW, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7ofyA (A:)
mdaelkifvssqhqpdiwrkaldqyeaktpgvkvvietggntsemqaqylntvmsakdss
ldvlmldvirpaqfatagwtsdfsgkdlsaylptyaeantvngkivalpafadsmflyyr
kdlldkygikppttwdelkeaskkvmegeknpelqglsfqgkaiegavctfllpywsegk
slvengklnfdnkaavdslklwksfvddgiskknisevatddtrkefqagkvlfavnwsy
awthfqgkesqvndkvgvarlpavkggeqttclggwefgvsayskqqdeakklveylssq
dvskfmainaallptyaalykdadvtktipwfadalpvvetakarpvtprynevsetirt
tvngvlagvmtpedgakqmesrlrrvlrlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7ofyA (A:)
mdaelkifvssqhqpdiwrkaldqyeaktpgvkvvietggntsemqaqylntvmsakdss
ldvlmldvirpaqfatagwtsdfsgkdlsaylptyaeantvngkivalpafadsmflyyr
kdlldkygikppttwdelkeaskkvmegeknpelqglsfqgkaiegavctfllpywsegk
slvengklnfdnkaavdslklwksfvddgiskknisevatddtrkefqagkvlfavnwsy
awthfqgkesqvndkvgvarlpavkggeqttclggwefgvsayskqqdeakklveylssq
dvskfmainaallptyaalykdadvtktipwfadalpvvetakarpvtprynevsetirt
tvngvlagvmtpedgakqmesrlrrvlrl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7ofyB (B:)
mdaelkifvssqhqpdiwrkaldqyeaktpgvkvvietggntsemqaqylntvmsakdss
ldvlmldvirpaqfatagwtsdfsgkdlsaylptyaeantvngkivalpafadsmflyyr
kdlldkygikppttwdelkeaskkvmegeknpelqglsfqgkaiegavctfllpywsegk
slvengklnfdnkaavdslklwksfvddgiskknisevatddtrkefqagkvlfavnwsy
awthfqgkesqvndkvgvarlpavkggeqttclggwefgvsayskqqdeakklveylssq
dvskfmainaallptyaalykdadvtktipwfadalpvvetakarpvtprynevsetirt
tvngvlagvmtpedgakqmesrlrrvlrlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7ofyB (B:)
daelkifvssqhqpdiwrkaldqyeaktpgvkvvietggntsemqaqylntvmsakdssl
dvlmldvirpaqfatagwtsdfsgkdlsaylptyaeantvngkivalpafadsmflyyrk
dlldkygikppttwdelkeaskkvmegeknpelqglsfqgkaiegavctfllpywsegks
lvengklnfdnkaavdslklwksfvddgiskknisevatddtrkefqagkvlfavnwsya
wthfqgkesqvndkvgvarlpavkggeqttclggwefgvsayskqqdeakklveylssqd
vskfmainaallptyaalykdadvtktipwfadalpvvetakarpvtprynevsetirtt
vngvlagvmtpedgakqmesrlrrvlrl