PDB entry 7odh

View 7odh on RCSB PDB site
Description: Crystal structure of the O2-tolerant MBH-P242C from Ralstonia eutropha in its as-isolated state
Class: electron transport
Keywords: nife, hydrogenase, knallgasbacteria, proteobacteria, aerobic hydrogen bacteria, dehydrogenase, oxidoreductase, hydrogen catalysis, metalloenzyme, metalloprotein, catalytic center, bimetallic, ni-fe active site, t-cluster, oxidized state, oxygen-tolerant hydrogenase, membrane, membrane-bound, oxidoreductase-oxidoreductase complex, p242c, medial cluster, electron relay, cubane cluster, low potential, cluster tuning, electron transport
Deposited on 2021-04-29, released 2021-07-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: XRAY
Resolution: 1.34 Å
R-factor: N/A
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Uptake hydrogenase large subunit
    Species: Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) [TaxId:381666]
    Gene: hoxG, PHG002
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7odhl_
  • Chain 'S':
    Compound: Uptake hydrogenase small subunit
    Species: Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) [TaxId:381666]
    Gene: hoxK, PHG001
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31892 (0-316)
      • engineered mutation (241)
      • expression tag (317-327)
  • Heterogens: NFV, SF4, CL, MG, O, F4S, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7odhL (L:)
msayatqgfnlddrgrrivvdpvtrieghmrcevnvdannvirnavstgtmwrglevilk
grdprdawafvericgvctgchalasvravenaldiripknahlireimaktlqvhdhav
hfyhlhaldwvdvmsalkadpkrtselqqlvspahplssagyfrdiqnrlkrfvesgqlg
pfmngywgskayvlppeanlmavthylealdlqkewvkihtifggknphpnylvggvpca
inldgigaasapvnmerlsfvkarideiiefnknvyvpdvlaigtlykqagwlyggglaa
tnvldygeypnvaynkstdqlpggailngnwdevfpvdprdsqqvqefvshswykyades
vglhpwdgvtepnyvlgantkgtrtrieqidesakyswiksprwrghamevgplsryila
yaharsgnkyaerpkeqleysaqminsaipkalglpetqytlkqllpstigrtlarales
qycgemmhsdwhdlvaniragdtatanvdkwdpatwplqakgvgtvaaprgalghwirik
dgrienyqcvvpttwngsprdykgqigafeaslmntpmvnpeqpveilrtlhsfdpclac
sth

    Sequence, based on observed residues (ATOM records): (download) 
    >7odhL (L:)
ayatqgfnlddrgrrivvdpvtrieghmrcevnvdannvirnavstgtmwrglevilkgr
dprdawafvericgvctgchalasvravenaldiripknahlireimaktlqvhdhavhf
yhlhaldwvdvmsalkadpkrtselqqlvspahplssagyfrdiqnrlkrfvesgqlgpf
mngywgskayvlppeanlmavthylealdlqkewvkihtifggknphpnylvggvpcain
ldaasapvnmerlsfvkarideiiefnknvyvpdvlaigtlykqagwlyggglaatnvld
ygeypnvaynkstdqlpggailngnwdevfpvdprdsqqvqefvshswykyadesvglhp
wdgvtepnyvlgantkgtrtrieqidesakyswiksprwrghamevgplsryilayahar
sgnkyaerpkeqleysaqminsaipkalglpetqytlkqllpstigrtlaralesqycge
mmhsdwhdlvaniragdtatanvdkwdpatwplqakgvgtvaaprgalghwirikdgrie
nyqcvvpttwngsprdykgqigafeaslmntpmvnpeqpveilrtlhsfdpclacsth

  • Chain 'S':
    No sequence available.