PDB entry 7obq

View 7obq on RCSB PDB site
Description: srp-sr at the distal site conformation
Deposited on 2021-04-23, released 2021-07-21
The last revision was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: srp RNA
    Species: Canis lupus familiaris [TaxId:9615]
  • Chain 'q':
    Compound: Signal recognition particle 19
    Species: Canis lupus familiaris [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
  • Chain 's':
    Compound: EM14S01-3B_G0054400.mRNA.1.CDS.1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PACBIOSEQ_LOCUS2833
    Database cross-references and differences (RAF-indexed):
  • Chain 'u':
    Compound: Signal recognition particle subunit SRP68,Signal recognition particle subunit SRP68
    Species: Canis lupus familiaris [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00004 (0-492)
    • Uniprot Q00004 (492-621)
      • conflict (492)
      • conflict (510-621)
  • Chain 'v':
    Compound: Signal recognition particle receptor subunit beta
    Species: Oryctolagus cuniculus [TaxId:9986]
    Gene: Srprb
    Database cross-references and differences (RAF-indexed):
  • Chain 'x':
    Compound: Signal recognition particle 54 kDa protein
    Species: Canis lupus familiaris [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
  • Chain 'y':
    Compound: SRP receptor subunit alpha
    Species: Oryctolagus cuniculus [TaxId:9986]
    Gene: SRPRA
    Database cross-references and differences (RAF-indexed):
  • Chain 'z':
    Compound: Signal recognition particle subunit SRP72
    Species: Canis lupus familiaris [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GNP, GTP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain 'q':
    Sequence, based on SEQRES records:
    >7obqq (q:)
    macaaarspaeqdrficiypaylnnkktiaegrripiskavenptateiqdvcsavglnv
    fleknkmysrewnrdvqyrgrvrvqlkqedgslclvqfpsrksvmlyaaemipklktrtq
    ktgggdqslqqgegskkgkgkkkk
    

    Sequence, based on observed residues (ATOM records):
    >7obqq (q:)
    rficiypaylnnkktiaegrripiskavenptateiqdvcsavglnvfleknkmysrewn
    rdvqyrgrvrvqlkqedgslclvqfpsrksvmlyaaemipklkt
    

  • Chain 's':
    Sequence, based on SEQRES records:
    >7obqs (s:)
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xx
    

    Sequence, based on observed residues (ATOM records):
    >7obqs (s:)
    xxxxxxxxxxxxxxxxxxxx
    

  • Chain 'u':
    Sequence, based on SEQRES records:
    >7obqu (u:)
    maaekqvpgggggggggggggggsgggrgaggeenkenerpsagskanrefgdslsleil
    qiikesqqqhglrhgdfqryrgycsrrqrrlrktlnfkmgnrhkftgkkvtedlltdnry
    lllvlmdaerawsyamqlkqeanteprkrfhllsrlrkavkhaeelerlcesnrvdaktk
    leaqaytaylsgmlrfehqewkaaieafnkcktiyeklasafteeqavlynqrveeispn
    irycaynigdqsainelmqmrlrsggtegllaeklealitqtrakqaatmsevewrgrtv
    pvkidkvrifllgladneaaiaqaeseetkerlfesmlsecrdaiqavreelkpdqkqrd
    ytldgesgkvsnlqylhsyltyiklstairrnenmakglqkalqqqpedeskrsprpqdl
    irlydiilqnlvellqlpgleedrafqkeiglktlvfkayrcffiaqsyvlvkkwsealv
    lydrvlkyanevnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >7obqu (u:)
    slsleilqiikesqqqhglrhgdfqryrgycsrrqrrlrktlnfkmgnrhkftgkkvted
    lltdnrylllvlmdaerawsyamqlkqeanteprkrfhllsrlrkavkhaeelerlcesn
    rvdaktkleaqaytaylsgmlrfehqewkaaieafnkcktiyeklasafteeqavlynqr
    veeispnirycaynigdqsainelmqmrlrsggtegllaeklealitqtrakqaatmsev
    ewrgrtvpvkidkvrifllgladneaaiaqaeseetkerlfesmlsecrdaiqavreelk
    pdqkqrdytldgesgkvsnlqylhsyltyiklstairrnenmakglqrsprpqdlirlyd
    iilqnlvellqlpgleedrafqkeiglktlvfkayrcffiaqsyvlvkkwsealvlydrv
    lkyanevnxxxxxxxxxxxxx
    

  • Chain 'v':
    Sequence, based on SEQRES records:
    >7obqv (v:)
    masadsrrlgdgdgaggafqpyldslrqelqqrdptvlsvvvallavlltlvfwklvrsr
    rssqravlllglcdsgktllfvrlltghyrdtqtsitdssatyrvnnnrgnsltlidlpg
    heslrlqflerfktsaravvfvvdsaafqrevkdvaeflyqvlidsmslkntpsfliacn
    kqdiamaksakliqqqlekelntlrvtrsaapstldssstapaqlgkkgkefefsqlplk
    veflecsakggrgdpgsadiqdlekwlakia
    

    Sequence, based on observed residues (ATOM records):
    >7obqv (v:)
    ravlllglcdsgktllfvrlltghyrdtqtsitdssatyrvnnnrgnsltlidlpghesl
    rlqflerfktsaravvfvvdsaafqrevkdvaeflyqvlidsmslkntpsfliacnkqdi
    amaksakliqqqlekelntlrvtrsaapstapaqlgkkgkefefsqlplkveflecsakg
    grgdpgsadiqdlekwlakia
    

  • Chain 'x':
    Sequence, based on SEQRES records:
    >7obqx (x:)
    mvladlgrkitsalrslsnatiineevlnamlkevctalleadvniklvkqlrenvksai
    dleemasglnkrkmiqhavfkelvklvdpgvkawtptkgkqnvimfvglqgsgktttcsk
    layyyqrkgwktclicadtfragafdqlkqnatkaripfygsytemdpviiasegvekfk
    nenfeiiivdtsgrhkqedslfeemlqvanaiqpdnivyvmdasigqaceaqakafkdkv
    dvasvivtkldghakgggalsavaatkspiifigtgehiddfepfktqpfiskllgmgdi
    eglidkvnelklddnealieklkhgqftlrdmyeqfqnimkmgpfsqilgmipgfgtdfm
    skgneqesmarlkklmtimdsmndqeldstdgakvfskqpgriqrvargsgvstrdvqel
    ltqytkfaqmvkkmggikglfkggdmsknvsqsqmaklnqqmakmmdprvlhhmggmagl
    qsmmrqfqqgaagnmkgmmgfnnm
    

    Sequence, based on observed residues (ATOM records):
    >7obqx (x:)
    atiineevlnamlkevctalleadvniklvkqlrenvksaidleemasglnkrkmiqhav
    fkelvklvdpgvkawtptkgkqnvimfvglqgsgktttcsklayyyqrkgwktclicadt
    fragafdqlkqnatkaripfygsytemdpviiasegvekfknenfeiiivdtsgrhkqed
    slfeemlqvanaiqpdnivyvmdasigqaceaqakafkdkvdvasvivtkldghakggga
    lsavaatkspiifigtgehiddfepfktqpfiskllgmgdieglealieklkhgqftlrd
    myeqfqnimkmgpfsqilgneqesmarlkklmtimdsmndqeldstdgakvfskqpgriq
    rvargsgvstrdvqelltqytkfaqmvkkmggi
    

  • Chain 'y':
    Sequence, based on SEQRES records:
    >7obqy (y:)
    mldfftifskgglvlwcfqgvsdsctgpvnalirsvllqerggnnsfthealtlkykldn
    qfelvfvvgfqkiltltyvdkliddvhrlfrdkyrteiqqqsalsllngtfdfqndflrl
    lreaeesskirapttmkkfedsekakkpvrsmietrgekpkekaknskkkgakkegsdgp
    latskavpaeksglpvgpengvelskeelirrkreefiqkhgrgleksskskseapkekg
    kkaprvwelggcankevldystpttngapeaalsedinlirgtgpggqlqdldcsssdde
    gaaqnstkpsstkgtlggmfgmlkglvgskslsredmesvldkmrdhliaknvaadiavq
    lcesvanklegkvmgtfstvtstvkqalqeslvqilqpqrrvdmlrdimdaqrrqrpyvv
    tfcgvngvgkstnlakisfwllengfsvliaacdtfragaveqlrthtrrlsalhppekh
    ggrtmvqlfekgygkdaagiameaiafarnqgfdvvlvdtagrmqdnaplmtalaklitv
    ntpdlvlfvgealvgneavdqlvkfnraladhsmaqtprlidgivltkfdtiddkvgaai
    smtyitskpivfvgtgqtycdlrslnakavvaalmka
    

    Sequence, based on observed residues (ATOM records):
    >7obqy (y:)
    ldfftifskgglvlwcfqgvsdsctgpvnalirsvllqerggnnsfthealtlkykldnq
    felvfvvgfqkiltltyvdkliddvhrlfrdkyrteiqqqsalsllngtfdfqndflrll
    reaeesskirapttmkkfedsekakkkslsredmesvldkmrdhliaknvaadiavqlce
    svanklegkvmgtfstvtstvkqalqeslvqilqpqrrvdmlrdimdaqrrqrpyvvtfc
    gvngvgkstnlakisfwllengfsvliaacdtfragaveqlrthtrrlsalhppekhggr
    tmvqlfekgygkdaagiameaiafarnqgfdvvlvdtagrmqdnaplmtalaklitvntp
    dlvlfvgealvgneavdqlvkfnraladhsmaqtprlidgivltkfdtiddkvgaaismt
    yitskpivfvgtgqtycdlrslnakavvaalmka
    

  • Chain 'z':
    Sequence, based on SEQRES records:
    >7obqz (z:)
    masggsggvsvpalwsevnrygqngdftralktvnkilqinkddvtalhckvvcliqngs
    fkealnvinthtkvlannslsfekayceyrlnrienalktiesanqqtdklkelygqvly
    rlerydeclavyrdlvrnsqddydeerktnlsavvaaqsnwekvvpenlglqegthelcy
    naacaligqgqlsqamkilqkaedlcrrslsedsdgteedpqaelaiihgqmayilqlqg
    rteealqlynqiiklkptdvgllavianniitinkdqnvfdskkkvkltnaegvefklsk
    kqlqaiefnkallamytnqaeqcrkisaslqsqspehllpvliqaaqlcrekqhtkaiel
    lqefsdqhpenaaeikltmaqlkisqgniskaclilrsieelkhkpgmvsalvtmyshee
    didsaievftqaiqwyqnhqpkssahlslireaanfklkygrkkeaisdleqlwkqnpkd
    ihtlaqlisayslvdpekakalskhlpssdsmslkvdvealenspgatyirkkggkvagd
    sqpkeqgqgdlkkkkkkkkgklpknydpkvtpdperwlpmrersyyrgrkkgkkkdqigk
    gtqgatagasseldasktvsspptsprpgsaatasastsniipprhqkpagapatkkkqq
    qkkkkggkggw
    

    Sequence, based on observed residues (ATOM records):
    >7obqz (z:)
    kkkkkkgklpknydpkvtpdperwlpmrersyyrgrkkgkkkdqigkgtqgatagassel
    da