PDB entry 7nsb

View 7nsb on RCSB PDB site
Description: supramolecular assembly module of yeast chelator-gid sr4 e3 ubiquitin ligase
Deposited on 2021-03-05, released 2021-05-05
The last revision was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '7':
    Compound: Glucose-induced degradation protein 7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: GID7, MOH2, YCL039W, YCL311, YCL39W
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: Vacuolar import and degradation protein 30
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: VID30, GID1, YGL227W
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: Glucose-induced degradation protein 7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: GID7, MOH2, YCL039W, YCL311, YCL39W
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: Glucose-induced degradation protein 8
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: GID8, DCR1, YMR135C, YM9375.04C
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '7':
    Sequence, based on SEQRES records:
    >7nsb7 (7:)
    mshtnkiayvlnndteetaspssvgcfdkkqltkllihtlkelgydsaanqlllesggyq
    nesnhiqtffkliktgqfhlinwqivcslplahssplrsewlqrlliptptpattslfdh
    mllqlqylqqlmssvnsstcsdaeiatlrnyveimilvnrqifleffhpvtnsashkgph
    talpvlylrkilknfieiwdsllvsndqflneenifnpettlrelstyltnpkltaqlnl
    erdhlidaiskyidpnelvpkgrllhllkqaikyqqsqdifniidpdddasfsspphrin
    llqdnfshdltvtfqewktiqdttdeiwfltfspngkylasatsessrgyfitvydveqd
    fkiyktcvslsqsvlylmfspdsrylvacpfsedvtiydmnatslpdasatdsfllypst
    rlspmdsfkldtttypddtessassssrpanansnqsrvwccdafhtaeragwmvvgspd
    reaivhslttkeslfslkgrtcialghdenisgrksidpakvlykptssngnwqyvedde
    tfprvhdvkisyddkyvllmthqgvidvydfsgfpskeelskqtvdpknflipriarldv
    gknmtcislplntthqgfhrqqisesqhlvlvslqdnelqmwdykeniliqkyfgqkqqh
    fiirscfaygnklvmsgsedgkiyiwdrirgnlvsvlsghstvmsnstkpmgkncnvvas
    npadkemfasggddgkikiwkisrn
    

    Sequence, based on observed residues (ATOM records):
    >7nsb7 (7:)
    vgcfdkkqltkllihtlkelgydsaanqlllnhiqtffkliktgqfhlinwqivcslpla
    hssplrsewlqrlliplfdhmllqlqylqqlmssvnsstcsdaeiatlrnyveimilvnr
    qifleffhtalpvlylrkilknfieiwdsllvsndqflneenifnpettlrelstyltnp
    kltaqlnlerdhlidaiskyidpnelvpkgrllhllkqaikyqqsqdifniidpdnfshd
    ltvtfqewktiqdttdeiwfltfspngkylasatitvydveqdfkiyktcvsvlylmfsp
    dsrylvacpfsedvtiydrvwccdafhtaeragwmvvgspdreaivhslttkeslfslkg
    rwqyveddetfprvhdvkisyddkyvllmthqgvidvydfsgfpipriarldvgknmtci
    slplnqhlvlvslqdnelqmwdykeniliqkyfgqkqqhfiirscfaygnklvmsgsedg
    kiyiwdrirgnlvsvlsghsncnvvasnpadkemfasggddgkikiwkisr
    

  • Chain 'a':
    Sequence, based on SEQRES records:
    >7nsba (a:)
    mseymddvdrefinclfpsyllqqpvaydlwilylqhrklfhklkntnlinadenptgvg
    mgrtkltaltrkeiwsklmnlgvlgtisfeavnddyliqvykyfypdvndftlrfgvkds
    nknsvrvmkassdmrknaqellepvlseremalnsntslendrndddddddddddddddd
    dddddesdleslegevdtdtddnnegdgsdnheeggeegsrgadadvssaqqraervadp
    wiyqrsrsainietesrnlwdtsdknsglqyyppdqspsssfssprvssgndkndneatn
    vlsnsgskkknsmipdiykilgyflpsrwqaqpnnslqlsqdgithlqpnpdyhsymtye
    rssassastrnrlrtsfensgkvdfavtwankslpdnkltifyyeikvlsvtstesaens
    nivigyklvenelmeattkksvsrssvagsssslggsnnmssnrvpstsftmegtqrrdy
    iyeggvsamslnvdgsinkcqkygfdlnvfgycgfdglitnsteqskeyakpfgrddvig
    cginfidgsifftkngihlgnaftdlndlefvpyvalrpgnsiktnfglnedfvfdiigy
    qdkwkslayehicrgrqmdvsieefdsdeseedetengpeenkstnvnedlmdidqedga
    agnkdtkklndekdnnlkfllgednrfidgklvrpdvnninnlsvddgslpntlnvmind
    yliheglvdvakgflkdlqkdavnvngqhseskdvirhnerqimkeermvkirqelryli
    nkgqiskcinyidneipdllknnlelvfelklanylvmikkssskdddeienlilkgqel
    snefiydtkipqslrdrfsgqlsnvsallaysnplveapkeisgylsdeylqerlfqvsn
    ntiltflhkdsecalenvisntramlstlleynafgstnssdpryykainfdedvlnl
    

    Sequence, based on observed residues (ATOM records):
    >7nsba (a:)
    mddvdrefinclfpsyllqqpvaydlwilylqhrklfhklkntnlinkltaltrkeiwsk
    lmnlgvlgtisfeavnddyliqvykyfypdvndftlrfnsmipdiykilgyflpsrwqaq
    pnnslqlsqdgithlqpnpdyavtwankslpdnkltifyyeikvlsvtnsnivigyklve
    nesinkcqkygfdlnvfgycgfdglitnseyakpfgrddvigcginfidgsifftkngih
    lgnaftdlndlefvpyvalrpgnsiktnfglnedfvfdiigyqdkwkslayehicrlkfl
    lgednrfidgklvrpdvnninnlsvddgslpntlnvmindyliheglvdvakgflkdlqk
    davneskdvirhnerqimkeermvkirqelrylinkgqiskcinyidneipdllknnlel
    vfelklanylvmikkssdeienlilkgqelsnefiydtkipqslrdrfsgqlsnvsalla
    ysnplveapkeisgylsdeylqerlfqvsnntiltflhkdsecalenvisntramlstll
    eynafgstnssdpryykainfdedvlnl
    

  • Chain 'g':
    Sequence, based on SEQRES records:
    >7nsbg (g:)
    mshtnkiayvlnndteetaspssvgcfdkkqltkllihtlkelgydsaanqlllesggyq
    nesnhiqtffkliktgqfhlinwqivcslplahssplrsewlqrlliptptpattslfdh
    mllqlqylqqlmssvnsstcsdaeiatlrnyveimilvnrqifleffhpvtnsashkgph
    talpvlylrkilknfieiwdsllvsndqflneenifnpettlrelstyltnpkltaqlnl
    erdhlidaiskyidpnelvpkgrllhllkqaikyqqsqdifniidpdddasfsspphrin
    llqdnfshdltvtfqewktiqdttdeiwfltfspngkylasatsessrgyfitvydveqd
    fkiyktcvslsqsvlylmfspdsrylvacpfsedvtiydmnatslpdasatdsfllypst
    rlspmdsfkldtttypddtessassssrpanansnqsrvwccdafhtaeragwmvvgspd
    reaivhslttkeslfslkgrtcialghdenisgrksidpakvlykptssngnwqyvedde
    tfprvhdvkisyddkyvllmthqgvidvydfsgfpskeelskqtvdpknflipriarldv
    gknmtcislplntthqgfhrqqisesqhlvlvslqdnelqmwdykeniliqkyfgqkqqh
    fiirscfaygnklvmsgsedgkiyiwdrirgnlvsvlsghstvmsnstkpmgkncnvvas
    npadkemfasggddgkikiwkisrn
    

    Sequence, based on observed residues (ATOM records):
    >7nsbg (g:)
    kqltkllihtlkelgydsaanqlllnelvpkgrllhllkqaikyqqsqdifniidpdfss
    pphrinllqdnfshdltvtfqewktiqdttdeiwfltfspngkylasatsessrgyfitv
    ydveqdfkiyktcvslsqsvlylmfspdsrylvacpfsedvtiydmrvwccdafhtaera
    gwmvvgspdreaivhslttkeslfslkgrtcialghdenisgrksidpakvlykptssng
    nwqyveddetfprvhdvkisyddkyvllmthqgvidvydfsgfpskeelskqtvdpknfl
    ipriarldvgknmtcislplnesqhlvlvslqdnelqmwdykeniliqkyfgqkqqhfii
    rscfaygnklvmsgsedgkiyiwdrirgnlvsvlsghncnvvasnpadkemfasggddgk
    ikiwkisrn
    

  • Chain 'h':
    Sequence, based on SEQRES records:
    >7nsbh (h:)
    mtistlsnettksgscsgqgknggkdftygkkcftkeewkeqvakysamgelyanktihy
    plkiqpnssggsqdegfatiqttpieptlprlllnyfvsmayedssirmakelgfirnnk
    diavfndlykikerfhikhliklgrineameeinsifglevleetfnatgsytgrtdrqq
    qqqqqqfdidgdlhfkllllnliemirshhqqenitkdsndfilnliqysqnklaikass
    svkkmqelelamtlllfplsdsadsgsiklpkslqnlysislrskiadlvnekllkfihp
    riqfeisnnnskfpdllnsdkkiitqnftvynnnlvngsngtkithissdqpinekmssn
    evtaaansvwlnqrdgnvgtgsaattfhnlenknywnqtsellsssngkekglefnnyys
    sefpyeprltqimklwcwcenqlhhnqigvprvensdenlyfqsgwshpqfekgggsggg
    sggsawshpqfek
    

    Sequence, based on observed residues (ATOM records):
    >7nsbh (h:)
    ygkkcftkeewkeqvakysamgelyanktihyplkiqpngfatiqttpieptlprlllny
    fvsmayedssirmakelgfirnnkdiavfndlykikerfhikhliklgrineameelhfk
    llllnliemirshilnliqysqnklaikasssvkkmqelelslqnlysislrskiadlvn
    ekllkfihpriqfeisnnnskfpdllnnnyyssefpyeprltqimklwcwcenqlhhnqi
    gvprven